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Center for Computational Systems Medicine
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Protein Summary

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AS Summary

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Protein Functional Features

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Gene Isoform Structures and Expression Levels

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Protein Structures

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pLDDT Score Distribution

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Ramachandran Plot of Protein Structures

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Potential Active Site Information

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Protein Structure and Feature Comparision

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Protein-Protein Interaction

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Related Drugs

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Related Diseases

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Clinically Important Variants

Protein:CSNK1G3

Protein Summary

check button Gene summary
Gene name: CSNK1G3
ASpdb.0 ID: 1456
Gene
Gene symbol

CSNK1G3

Gene ID

1456

Gene namecasein kinase 1 gamma 3
SynonymsCKI-gamma 3|CSNK1G3L
Cytomap

5q23.2

Type of geneprotein-coding
Descriptioncasein kinase I isoform gamma-3casein kinase I
Modification date20240305
UniProtAcc

Q9Y6M4


check button Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
GeneCSNK1G3

GO:0004674

protein serine/threonine kinase activity

25500533



AS Summary

check button Information of the canonical protein with experimentally identified structure from PDB (2023).
UniProt AccFile namePDB IDMethodResolutionChainStartEnd
Q9Y6M4-1Q9Y6M4-1_4g17_A.pdb4G17X-ray2.1A34334

check button ASpdb's canonical and alternatively spliced isoform information.
accession_idgene_namecanonical_idalternative_idcanonical_lengthalternative_lengthcanonical_startcanonical_endtypeoriginalSEQvariationSEQalternative_startalternative_end
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-2447455430430SubstitutionKNCQKVLNMW430438
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-3447423363394Deletionnonenone362362
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-3447423430430SubstitutionKNCQKVLNMW398406
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-4447424282282SubstitutionEEE282283
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-4447424363394Deletionnonenone363363
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-4447424430430SubstitutionKNCQKVLNMW399407
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-5447348175Deletionnonenone00
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-5447348363394Deletionnonenone287287
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-5447348430430SubstitutionKNCQKVLNMW323331
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-64473111113Deletionnonenone00
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-6447311282282SubstitutionEEE169170
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-6447311363394Deletionnonenone250250
Q9Y6M4CSNK1G3Q9Y6M4-1Q9Y6M4-6447311430430SubstitutionKNCQKVLNMW286294

check buttonMultiple sequence alignment of our canonical and alternatively spliced CSNK1G3

check button Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of CSNK1G3
UniProt-idENSGENSTENSP
Q9Y6M4-1ENSG00000151292.19ENST00000361991.6ENSP00000354942.2
Q9Y6M4-2ENSG00000151292.19ENST00000345990.9ENSP00000334735.5
Q9Y6M4-2ENSG00000151292.19ENST00000360683.6ENSP00000353904.2
Q9Y6M4-3ENSG00000151292.19ENST00000521364.5ENSP00000429412.1
Q9Y6M4-4ENSG00000151292.19ENST00000510842.6ENSP00000423838.2
Q9Y6M4-5ENSG00000151292.19ENST00000512718.7ENSP00000421998.3
Q9Y6M4-6ENSG00000151292.19ENST00000511130.6ENSP00000421385.2

UniProt-idNM IDNP ID
Q9Y6M4-1NM_004384.4NP_004375.2
Q9Y6M4-2NM_001044723.2NP_001038188.1
Q9Y6M4-2XM_005271892.2XP_005271949.1
Q9Y6M4-3NM_001031812.3NP_001026982.1
Q9Y6M4-4NM_001270572.1NP_001257501.1
Q9Y6M4-4XM_005271895.2XP_005271952.1
Q9Y6M4-4XM_017009069.1XP_016864558.1
Q9Y6M4-5NM_001270573.1NP_001257502.1
Q9Y6M4-6NM_001270574.1NP_001257503.1

check buttonAmino acid sequences of our canonical and alternatively spliced CSNK1G3
accession_idProtein sequence
Q9Y6M4-1MENKKKDKDKSDDRMARPSGRSGHNTRGTGSSSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFY
KQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQV
IHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA
TPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSK
Q9Y6M4-2MENKKKDKDKSDDRMARPSGRSGHNTRGTGSSSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFY
KQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQV
IHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA
TPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSK
NQSADHRAAWDSQQANPHHLRAHLAADRHGGSVQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDETNCQKVLNMWCCCFFKRRKRKT
Q9Y6M4-3MENKKKDKDKSDDRMARPSGRSGHNTRGTGSSSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFY
KQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQV
IHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA
TPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSK
Q9Y6M4-4MENKKKDKDKSDDRMARPSGRSGHNTRGTGSSSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFY
KQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQV
IHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA
TPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQS
Q9Y6M4-5MKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKP
ENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
TLKERYQKIGDTKRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALSS
Q9Y6M4-6MVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPY
REHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRR
LDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQVVSSTNGELNTDDPTAGRSN

Protein Functional Features

check buttonMain function of this protein. (from UniProt)
CSNK1G3 (go to UniProt):Q9Y6M4

check buttonRetention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
Accession_idSubsectionStartEndFuncitonal featureSplicing information
Q9Y6M4Domain43313Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159Type=Substitution;Start=282;End=282
Q9Y6M4Domain43313Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159Type=Deletion;Start=1;End=75
Q9Y6M4Domain43313Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159Type=Deletion;Start=1;End=113
Q9Y6M4Domain43313Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159Type=Substitution;Start=282;End=282
Q9Y6M4Region135Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=75
Q9Y6M4Region135Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=113
Q9Y6M4Region341374Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Region341374Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Region341374Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Region341374Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Region391416Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Region391416Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Region391416Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Region391416Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Compositional bias120Note=Basic and acidic residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=75
Q9Y6M4Compositional bias120Note=Basic and acidic residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=113
Q9Y6M4Compositional bias392416Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Compositional bias392416Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Compositional bias392416Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394
Q9Y6M4Compositional bias392416Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=363;End=394


Gene Isoform Structures and Expression Levels for CSNK1G3

check buttonGene structures of our canonical and alternative spliced genes of CSNK1G3
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
gene isoform structure of CSNK1G3

check button Expression levels of gene isoforms across GTEx.
gtex expression

check button Expression levels of gene isoforms across TCGA.
tcga expression


Protein Structures

check button PDB and CIF files of the predicted protein structures
* Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
3D view using mol* of Q9Y6M4-1
3D view using mol* of Q9Y6M4-2
3D view using mol* of Q9Y6M4-3
3D view using mol* of Q9Y6M4-4
3D view using mol* of Q9Y6M4-5
3D view using mol* of Q9Y6M4-6


pLDDT Score Distribution

check button pLDDT score distribution of the predicted protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
pLDDT distribution across the protein length of Q9Y6M4-1
all structure
pLDDT distribution across the protein length of Q9Y6M4-2
all structure
pLDDT distribution across the protein length of Q9Y6M4-3
all structure
pLDDT distribution across the protein length of Q9Y6M4-4
all structure
pLDDT distribution across the protein length of Q9Y6M4-5
all structure
pLDDT distribution across the protein length of Q9Y6M4-6
all structure


Ramachandran Plot of Protein Structures


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide.
Ramachandran plot of Q9Y6M4-1
all structure
Ramachandran plot of Q9Y6M4-6
all structure

Potential Active Site Information


check button The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite.
UniProt-idSite scoreSizeD scoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues
Q9Y6M4-11.0641280.939261.0230.3850.7931.0960.471.4620.3220.451124,132,166,212,213,214,241,245,246,249,250,251,25
2,257,260,261,264,389,390,391,392,393,394,395
Q9Y6M4-21.0014230.9851124.3540.520.6990.9270.4031.1480.3510.52449,50,51,52,53,57,70,72,86,90,100,116,117,118,119,
120,121,122,124,125,128,132,164,166,167,169,184,18
5,212,213,214,215,241,246,249,250,251,252,253,254,
257,260,261,264,331,333,384,385,386,387,388,389,39
0,391,392,393,394,437,438,439,440,441,442,443
Q9Y6M4-31.073501.13956.2840.5860.7120.8990.8880.7261.2240.86949,50,51,52,53,54,57,70,72,78,79,80,82,86,90,100,1
16,117,118,119,120,121,122,124,125,128,129,132,162
,164,166,167,169,184,185,188,211,212,213,214,241,2
45,246,249,250,251,252,257,260,261,264,331,332,333
,402,403,404,405,406,407,408,409,410,411,413
Q9Y6M4-41.0623911.11150.7650.5280.7420.940.8050.8740.920.71749,50,51,52,53,54,57,70,72,78,79,80,90,100,116,117
,118,119,120,121,122,124,125,128,132,162,164,166,1
67,169,172,173,184,185,188,208,209,210,211,212,213
,214,241,249,250,251,252,257,260,261,264,332,333,3
34,390,391,392,393,394,395,396,397,399,400,401,403
,404,405,407,408,409,410,411,412
Q9Y6M4-51.0321311.002631.8060.5620.7450.9910.4091.180.3470.5345,7,10,13,14,84,86,112,113,114,115,116,119,120,121
,126,127,129,132,133,135,145,149,150,151,296,298,3
00,302,303,304,305,306,307,308
Q9Y6M4-61.0131460.95372.1550.5590.7170.9760.2691.2910.2080.43111,19,51,53,75,96,97,98,99,100,101,128,136,137,138
,139,144,147,148,151,264,265,266,267,268,269,270,2
71,272,273

Protein Structure and Feature Comparision


check button Protein Structure Comparision Using Template Modeling Scores (TM-score).
all structure

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green)
3D view using mol* of Q9Y6M4-1_Q9Y6M4-1_4g17_A.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q9Y6M4-1_4g17_A_Q9Y6M4-2.pdb
3D view using mol* of Q9Y6M4-1_4g17_A_Q9Y6M4-3.pdb
3D view using mol* of Q9Y6M4-1_4g17_A_Q9Y6M4-4.pdb
3D view using mol* of Q9Y6M4-1_4g17_A_Q9Y6M4-5.pdb
3D view using mol* of Q9Y6M4-1_4g17_A_Q9Y6M4-6.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q9Y6M4-1_Q9Y6M4-2.pdb
3D view using mol* of Q9Y6M4-1_Q9Y6M4-3.pdb
3D view using mol* of Q9Y6M4-1_Q9Y6M4-4.pdb
3D view using mol* of Q9Y6M4-1_Q9Y6M4-5.pdb
3D view using mol* of Q9Y6M4-1_Q9Y6M4-6.pdb

check button Protein Feature Comparison of the protein sequendary structures among the protiens.
./stats/secondary_structure/figure/Q9Y6M4-1_vs_Q9Y6M4-2.png
all structure<
./stats/secondary_structure/figure/Q9Y6M4-1_vs_Q9Y6M4-3.png
all structure<
./stats/secondary_structure/figure/Q9Y6M4-1_vs_Q9Y6M4-4.png
all structure<
./stats/secondary_structure/figure/Q9Y6M4-1_vs_Q9Y6M4-5.png
all structure<
./stats/secondary_structure/figure/Q9Y6M4-1_vs_Q9Y6M4-6.png
all structure<

check button Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens.
./stats/relative_asa/Q9Y6M4-1_vs_Q9Y6M4-2.png
all structure<
./stats/relative_asa/Q9Y6M4-1_vs_Q9Y6M4-3.png
all structure<
./stats/relative_asa/Q9Y6M4-1_vs_Q9Y6M4-4.png
all structure<
./stats/relative_asa/Q9Y6M4-1_vs_Q9Y6M4-5.png
all structure<
./stats/relative_asa/Q9Y6M4-1_vs_Q9Y6M4-6.png
all structure<


Protein-Protein Interaction


check button Interactors from UniProt.
Accession_idSubsectionStartEndFuncitonal featureSplicing information


check button Interactors from STRING.
Gene nameInteractors


Related Drugs to CSNK1G3


check button Drugs targeting this gene/protein.
(DrugBank)
UniProt accessionGene nameDrugBank IDDrug nameDrug groupActions
Q9Y6M4CSNK1G3DB074894-Amino-2-[(3-chlorophenyl)amino]-5-(4-fluorobenzoyl)-1,3-thiazol-3-iumexperimental
Q9Y6M4CSNK1G3DB07488{4-Amino-2-[(4-methoxyphenyl)amino]-1,3-thiazol-5-yl}(4-methoxyphenyl)methanoneexperimental
Q9Y6M4CSNK1G3DB07664K-00546experimental
Q9Y6M4CSNK1G3DB04751Purvalanol Aexperimental

Related Diseases to CSNK1G3


check button Previous studies relating to the alternative splicing of CSNK1G3 and disease information from the MeSH term (PubMed)
GenePMIDTitleAbstractMeSH IDMeSH term


Clinically important variants in CSNK1G3


check button (ClinVar, 04/20/2024)
accession_iduniprot_idgene_nameTypeVariantClinical_significance