Protein:SEC31A |
Protein Summary |
 Gene summary |
| Gene name: SEC31A | ASpdb.0 ID: 22872 | Gene | Gene symbol | SEC31A | Gene ID | 22872 |
| Gene name | SEC31 homolog A, COPII coat complex component |
| Synonyms | ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1 |
| Cytomap | 4q21.22 |
| Type of gene | protein-coding |
| Description | protein transport protein Sec31ASEC31 homolog A, COPII coating complex componentSEC31-like protein 1SEC31-related protein Aweb1-like proteinyeast Sec31p homolog |
| Modification date | 20240411 |
| UniProtAcc | O94979 |
| Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Gene | SEC31A | GO:0005737 | cytoplasm | 17196169 |
| Gene | SEC31A | GO:0005783 | endoplasmic reticulum | 17196169 |
| Gene | SEC31A | GO:0005829 | cytosol | - |
| Gene | SEC31A | GO:0030120 | vesicle coat | 22792322 |
| Gene | SEC31A | GO:0030127 | COPII vesicle coat | 17499046|27716508 |
| Gene | SEC31A | GO:0030134 | COPII-coated ER to Golgi transport vesicle | 22358839|22802641 |
| Gene | SEC31A | GO:0043231 | intracellular membrane-bounded organelle | - |
| Gene | SEC31A | GO:0048471 | perinuclear region of cytoplasm | 17196169|19401338 |
| Gene | SEC31A | GO:0051592 | response to calcium ion | 17196169 |
| Gene | SEC31A | GO:0070971 | endoplasmic reticulum exit site | 25201882|28442536 |
| Gene | SEC31A | GO:0090110 | COPII-coated vesicle cargo loading | 17499046|18843296 |
AS Summary |
| Information of the canonical protein with experimentally identified structure from PDB (2023). |
| UniProt Acc | File name | PDB ID | Method | Resolution | Chain | Start | End |
| O94979-1 | O94979-1_3wxa_C.pdb | 3WXA | X-ray | 2.36 | C | 837 | 848 |
| ASpdb's canonical and alternatively spliced isoform information. |
| accession_id | gene_name | canonical_id | alternative_id | canonical_length | alternative_length | canonical_start | canonical_end | type | originalSEQ | variationSEQ | alternative_start | alternative_end |
| O94979 | SEC31A | O94979-1 | O94979-5 | 1220 | 509 | 504 | 509 | Substitution | IALALN | VNFWES | 504 | 509 |
| O94979 | SEC31A | O94979-1 | O94979-5 | 1220 | 509 | 510 | 1220 | Deletion | none | none | 509 | 509 |
| O94979 | SEC31A | O94979-1 | O94979-6 | 1220 | 1067 | 504 | 542 | Deletion | none | none | 503 | 503 |
| O94979 | SEC31A | O94979-1 | O94979-6 | 1220 | 1067 | 876 | 876 | Substitution | P | R | 837 | 837 |
| O94979 | SEC31A | O94979-1 | O94979-6 | 1220 | 1067 | 877 | 990 | Deletion | none | none | 837 | 837 |
| O94979 | SEC31A | O94979-1 | O94979-7 | 1220 | 969 | 1 | 228 | Deletion | none | none | 0 | 0 |
| O94979 | SEC31A | O94979-1 | O94979-7 | 1220 | 969 | 229 | 260 | Substitution | MVLASEDDRLPVIQMWDLRFASSPLRVLENHA | MVKLVLLSIVLLKVTVPKLSNYLLQLDFMPIH | 1 | 32 |
| O94979 | SEC31A | O94979-1 | O94979-7 | 1220 | 969 | 504 | 542 | Deletion | none | none | 275 | 275 |
| O94979 | SEC31A | O94979-1 | O94979-7 | 1220 | 969 | 834 | 834 | Substitution | H | HVRIAPTVTTWSNKTPTALPSHPPAASPSDTQ | 567 | 598 |
| O94979 | SEC31A | O94979-1 | O94979-7 | 1220 | 969 | 974 | 988 | Deletion | none | none | 737 | 737 |
| Multiple sequence alignment of our canonical and alternatively spliced SEC31A |
| Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of SEC31A |
| UniProt-id | ENSG | ENST | ENSP |
| O94979-1 | ENSG00000138674.17 | ENST00000355196.6 | ENSP00000347329.2 |
| O94979-1 | ENSG00000138674.17 | ENST00000395310.7 | ENSP00000378721.2 |
| O94979-1 | ENSG00000138674.17 | ENST00000448323.5 | ENSP00000400926.1 |
| O94979-6 | ENSG00000138674.17 | ENST00000500777.6 | ENSP00000421464.1 |
| O94979-6 | ENSG00000138674.17 | ENST00000513858.5 | ENSP00000426886.1 |
| UniProt-id | NM ID | NP ID |
| O94979-1 | NM_001077207.3 | NP_001070675.1 |
| O94979-1 | NM_001318120.1 | NP_001305049.1 |
| O94979-6 | NM_001300744.2 | NP_001287673.1 |
| Amino acid sequences of our canonical and alternatively spliced SEC31A |
| accession_id | Protein sequence |
| O94979-1 | MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLI AGGENGNIILYDPSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVLENHARGILAIAWSM ADPELLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQQQQQHHVFISQVVTEKEFLSRSDQLQQAVQ SQGFINYCQKKIDASQTEFEKNVWSFLKVNFEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAIILAIAGGQELLARTQKKYFAKSQSKITRLIT AVVMKNWKEIVESCDLKNWREALAAVLTYAKPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQLP KGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTG PQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFLYDKLREQTLSPTITSGL |
| O94979-5 | MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLI AGGENGNIILYDPSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVLENHARGILAIAWSM ADPELLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQQQQQHHVFISQVVTEKEFLSRSDQLQQAVQ |
| O94979-6 | MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLI AGGENGNIILYDPSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVLENHARGILAIAWSM ADPELLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQQQQQHHVFISQVVTEKEFLSRSDQLQQAVQ SQGFINYCQKKIDASQTEFEKNVWSFLKVNFEDDSRGKYLELLGYRKEDLGKKHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLT GNFESAVDLCLHDNRMADAIILAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYAKPDEFSALC DLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDLIEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAA QGSIAAALAFLPDNTNQPNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNV NPNAAGQLPTSPGHMHTQVPPYPQPQRPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFP QPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKL |
| O94979-7 | MVKLVLLSIVLLKVTVPKLSNYLLQLDFMPIHRGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAV LSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFGTGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFE NVRMPSHQGAEQQQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVNFEDDSRGKYLELLGYRKE DLGKKHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAIILAIAGGQELLARTQKKYFAKSQSKITR LITAVVMKNWKEIVESCDLKNWREALAAVLTYAKPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSL QDLIEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIMQLRDRLCRAQGEPVAGHESPKIPYEKQ QLPKGRPGPVAGHHQMPRVQTQQYYPHVRIAPTVTTWSNKTPTALPSHPPAASPSDTQGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHT QVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHG GPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQ PFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLE |
Protein Functional Features |
| Main function of this protein. (from UniProt) |
| SEC31A (go to UniProt):O94979 |
| Retention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Accession_id | Subsection | Start | End | Funcitonal feature | Splicing information |
| O94979 | Repeat | 4 | 47 | Note=WD 1 | Type=Deletion;Start=1;End=228 |
| O94979 | Repeat | 68 | 111 | Note=WD 2 | Type=Deletion;Start=1;End=228 |
| O94979 | Repeat | 120 | 160 | Note=WD 3 | Type=Deletion;Start=1;End=228 |
| O94979 | Repeat | 166 | 206 | Note=WD 4 | Type=Deletion;Start=1;End=228 |
| O94979 | Repeat | 209 | 254 | Note=WD 5 | Type=Deletion;Start=1;End=228 |
| O94979 | Repeat | 209 | 254 | Note=WD 5 | Type=Substitution;Start=229;End=260 |
| O94979 | Repeat | 258 | 298 | Note=WD 6 | Type=Substitution;Start=229;End=260 |
| O94979 | Region | 161 | 471 | Note=Interaction with SEC13;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Deletion;Start=1;End=228 |
| O94979 | Region | 161 | 471 | Note=Interaction with SEC13;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Substitution;Start=229;End=260 |
| O94979 | Region | 791 | 908 | Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=510;End=1220 |
| O94979 | Region | 791 | 908 | Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Substitution;Start=876;End=876 |
| O94979 | Region | 791 | 908 | Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=877;End=990 |
| O94979 | Region | 791 | 908 | Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Substitution;Start=834;End=834 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Deletion;Start=510;End=1220 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Substitution;Start=876;End=876 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Deletion;Start=877;End=990 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Substitution;Start=834;End=834 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Deletion;Start=974;End=988 |
| O94979 | Region | 924 | 1096 | Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=510;End=1220 |
| O94979 | Region | 924 | 1096 | Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=877;End=990 |
| O94979 | Region | 924 | 1096 | Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=974;End=988 |
| O94979 | Motif | 842 | 848 | Note=ALG-2-binding site motif-2 (ABS-2)%2C | Type=Deletion;Start=510;End=1220 |
| O94979 | Compositional bias | 865 | 881 | Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=510;End=1220 |
| O94979 | Compositional bias | 865 | 881 | Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Substitution;Start=876;End=876 |
| O94979 | Compositional bias | 865 | 881 | Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=877;End=990 |
| O94979 | Compositional bias | 924 | 938 | Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=510;End=1220 |
| O94979 | Compositional bias | 924 | 938 | Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=877;End=990 |
| O94979 | Compositional bias | 979 | 996 | Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=510;End=1220 |
| O94979 | Compositional bias | 979 | 996 | Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=877;End=990 |
| O94979 | Compositional bias | 979 | 996 | Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=974;End=988 |
| O94979 | Compositional bias | 1026 | 1056 | Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=510;End=1220 |
Gene Isoform Structures and Expression Levels for SEC31A |
| Gene structures of our canonical and alternative spliced genes of SEC31A * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Expression levels of gene isoforms across GTEx. |
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| Expression levels of gene isoforms across TCGA. |
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Protein Structures |
| PDB and CIF files of the predicted protein structures * Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format. |
| 3D view using mol* of O94979-1 |
| 3D view using mol* of O94979-5 |
| 3D view using mol* of O94979-6 |
| 3D view using mol* of O94979-7 |
pLDDT Score Distribution |
| pLDDT score distribution of the predicted protein structures from AlphaFold2 * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
| pLDDT distribution across the protein length of O94979-1 |
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| pLDDT distribution across the protein length of O94979-5 |
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| pLDDT distribution across the protein length of O94979-6 |
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| pLDDT distribution across the protein length of O94979-7 |
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Ramachandran Plot of Protein Structures |
| Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide. |
| Ramachandran plot of O94979-1 |
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| Ramachandran plot of O94979-5 |
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| Ramachandran plot of O94979-6 |
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Potential Active Site Information |
| The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite. |
| UniProt-id | Site score | Size | D score | Volume | Exposure | Enclosure | Contact | Phobic | Philic | Balance | Don/Acc | Residues |
| O94979-1 | 1.065 | 317 | 1.04 | 934.332 | 0.451 | 0.796 | 0.995 | 0.415 | 1.158 | 0.358 | 1.007 | 11,13,14,16,17,18,29,31,32,70,71,72,73,74,75,76,12 6,127,128,129,130,132,135,172,173,174,175,176,178, 189,215,217,218,219,220,221,223,234,264,265,266,26 7,268,269,270,271,281,307,308,309,310,311,312,313, 316,324 |
| O94979-5 | 1.086 | 300 | 1.03 | 905.863 | 0.406 | 0.826 | 1.06 | 0.356 | 1.244 | 0.286 | 0.951 | 11,13,14,16,17,18,31,32,70,71,73,74,75,76,126,127, 128,129,130,132,172,173,174,175,178,217,218,219,22 0,221,234,264,265,266,267,268,269,270,271,307,308, 309,310,311,313,316 |
| O94979-6 | 1.059 | 323 | 1.035 | 967.603 | 0.449 | 0.787 | 0.983 | 0.408 | 1.156 | 0.352 | 0.938 | 11,13,14,16,17,18,31,32,70,71,73,74,75,76,126,127, 128,129,130,132,172,173,174,175,176,178,189,215,21 6,217,218,219,220,221,234,235,264,265,266,267,268, 269,270,271,307,308,309,310,311,312,313,316,324 |
| O94979-7 | 1.028 | 122 | 1.092 | 428.75 | 0.668 | 0.653 | 0.861 | 1.139 | 0.735 | 1.55 | 1.553 | 259,260,262,263,267,268,269,270,271,272,275,348,35 1,354,355,356,357,359,360,361,363,364,372,373,376, 377,378,381,384,385,387,388,391,392 |
Protein Structure and Feature Comparision |
| Protein Structure Comparision Using Template Modeling Scores (TM-score). |
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| Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green) |
| 3D view using mol* of O94979-1_O94979-1_3wxa_C.pdb |
| Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green) |
| 3D view using mol* of O94979-1_3wxa_C_O94979-5.pdb |
| 3D view using mol* of O94979-1_3wxa_C_O94979-6.pdb |
| 3D view using mol* of O94979-1_3wxa_C_O94979-7.pdb |
| Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green) |
| 3D view using mol* of O94979-1_O94979-5.pdb |
| 3D view using mol* of O94979-1_O94979-6.pdb |
| 3D view using mol* of O94979-1_O94979-7.pdb |
| Protein Feature Comparison of the protein sequendary structures among the protiens. |
| ./stats/secondary_structure/figure/O94979-1_vs_O94979-5.png |
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| ./stats/secondary_structure/figure/O94979-1_vs_O94979-6.png |
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| ./stats/secondary_structure/figure/O94979-1_vs_O94979-7.png |
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| Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens. |
| ./stats/relative_asa/O94979-1_vs_O94979-5.png |
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| ./stats/relative_asa/O94979-1_vs_O94979-6.png |
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| ./stats/relative_asa/O94979-1_vs_O94979-7.png |
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Protein-Protein Interaction |
| Interactors from UniProt. |
| Accession_id | Subsection | Start | End | Funcitonal feature | Splicing information |
| O94979 | Region | 161 | 471 | Note=Interaction with SEC13;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Deletion;Start=1;End=228 |
| O94979 | Region | 161 | 471 | Note=Interaction with SEC13;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Substitution;Start=229;End=260 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Deletion;Start=510;End=1220 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Substitution;Start=876;End=876 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Deletion;Start=877;End=990 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Substitution;Start=834;End=834 |
| O94979 | Region | 800 | 1113 | Note=Interaction with PDCD6;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16957052;Dbxref=PMID:16957052 | Type=Deletion;Start=974;End=988 |
| Interactors from STRING. |
| Gene name | Interactors |
Related Drugs to SEC31A |
| Drugs targeting this gene/protein. (DrugBank) |
| UniProt accession | Gene name | DrugBank ID | Drug name | Drug group | Actions |
Related Diseases to SEC31A |
| Previous studies relating to the alternative splicing of SEC31A and disease information from the MeSH term (PubMed) |
| Gene | PMID | Title | Abstract | MeSH ID | MeSH term |
Clinically important variants in SEC31A |
| (ClinVar, 04/20/2024) |
| accession_id | uniprot_id | gene_name | Type | Variant | Clinical_significance |
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