Protein:DICER1 |
Protein Summary |
 Gene summary |
| Gene name: DICER1 | ASpdb.0 ID: 23405 | Gene | Gene symbol | DICER1 | Gene ID | 23405 |
| Gene name | dicer 1, ribonuclease III |
| Synonyms | DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2|aviD |
| Cytomap | 14q32.13 |
| Type of gene | protein-coding |
| Description | endoribonuclease DicerDicer1, Dcr-1 homologdicer 1, double-stranded RNA-specific endoribonucleasedicer 1, ribonuclease type IIIhelicase MOIhelicase with RNAse motif |
| Modification date | 20240416 |
| UniProtAcc | Q9UPY3 |
| Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Gene | DICER1 | GO:0003725 | double-stranded RNA binding | 12411504 |
| Gene | DICER1 | GO:0004521 | RNA endonuclease activity | 25549615 |
| Gene | DICER1 | GO:0004525 | ribonuclease III activity | 21753850 |
| Gene | DICER1 | GO:0010804 | negative regulation of tumor necrosis factor-mediated signaling pathway | 26435691 |
| Gene | DICER1 | GO:0016442 | RISC complex | 16357216 |
| Gene | DICER1 | GO:0016442 | RISC complex | 17531811 |
| Gene | DICER1 | GO:0030422 | siRNA processing | 15973356|17452327|23661684 |
| Gene | DICER1 | GO:0031054 | pre-miRNA processing | 15973356|16357216|18178619|23661684|25549615 |
| Gene | DICER1 | GO:0035196 | miRNA processing | 15973356|23661684 |
| Gene | DICER1 | GO:0035197 | siRNA binding | 15973356 |
| Gene | DICER1 | GO:0048471 | perinuclear region of cytoplasm | 19022417 |
| Gene | DICER1 | GO:0070062 | extracellular exosome | 28159509 |
| Gene | DICER1 | GO:0070578 | RISC-loading complex | 15973356|16357216|17531811|18178619|19820710|23661684 |
| Gene | DICER1 | GO:0070883 | pre-miRNA binding | 18178619 |
| Gene | DICER1 | GO:0070883 | pre-miRNA binding | 18508075|25549615 |
| Gene | DICER1 | GO:0070922 | RISC complex assembly | 15973356|16271387|18178619|23661684 |
AS Summary |
| Information of the canonical protein with experimentally identified structure from PDB (2023). |
| UniProt Acc | File name | PDB ID | Method | Resolution | Chain | Start | End |
| Q9UPY3-1 | Q9UPY3-1_5zak_A.pdb | 5ZAK | EM | 4.4 | A | 45 | 1913 |
| ASpdb's canonical and alternatively spliced isoform information. |
| accession_id | gene_name | canonical_id | alternative_id | canonical_length | alternative_length | canonical_start | canonical_end | type | originalSEQ | variationSEQ | alternative_start | alternative_end |
| Q9UPY3 | DICER1 | Q9UPY3-1 | Q9UPY3-2 | 1922 | 1829 | 1789 | 1922 | Substitution | LRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS | KSFLQMYPVPLCENCLKWNQKLPNLARLRELTTGRSESLWK | 1789 | 1829 |
| Q9UPY3 | DICER1 | Q9UPY3-1 | Q9UPY3-3 | 1922 | 820 | 1 | 13 | Substitution | MKSPALQPLSMAG | MLAWESDHFLRIL | 1 | 13 |
| Q9UPY3 | DICER1 | Q9UPY3-1 | Q9UPY3-3 | 1922 | 820 | 14 | 1115 | Deletion | none | none | 13 | 13 |
| Multiple sequence alignment of our canonical and alternatively spliced DICER1 |
| Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of DICER1 |
| UniProt-id | ENSG | ENST | ENSP |
| Q9UPY3-1 | ENSG00000100697.17 | ENST00000343455.8 | ENSP00000343745.3 |
| Q9UPY3-1 | ENSG00000100697.17 | ENST00000393063.6 | ENSP00000376783.1 |
| Q9UPY3-1 | ENSG00000100697.17 | ENST00000526495.6 | ENSP00000437256.1 |
| Q9UPY3-1 | ENSG00000100697.17 | ENST00000527414.5 | ENSP00000435681.1 |
| Q9UPY3-1 | ENSG00000100697.17 | ENST00000529720.2 | ENSP00000433926.2 |
| Q9UPY3-1 | ENSG00000100697.17 | ENST00000531162.7 | ENSP00000433060.3 |
| Q9UPY3-1 | ENSG00000100697.17 | ENST00000674628.2 | ENSP00000502730.2 |
| Q9UPY3-2 | ENSG00000100697.17 | ENST00000541352.5 | ENSP00000444719.1 |
| UniProt-id | NM ID | NP ID |
| Q9UPY3-1 | NM_001271282.2 | NP_001258211.1 |
| Q9UPY3-1 | NM_001291628.1 | NP_001278557.1 |
| Q9UPY3-1 | NM_030621.4 | NP_085124.2 |
| Q9UPY3-1 | NM_177438.2 | NP_803187.1 |
| Q9UPY3-2 | NM_001195573.1 | NP_001182502.1 |
| Amino acid sequences of our canonical and alternatively spliced DICER1 |
| accession_id | Protein sequence |
| Q9UPY3-1 | MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFS RNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERL LMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILCGIIFVER RYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGPRVTINTA IGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPI PQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDV DHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRTSSLENHDQMSVNCRTLLSESPGKLHVEVSA DLTAINGLSYNQNLANGSYDLANRDFCQGNQLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK VSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNP SEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKF |
| Q9UPY3-2 | MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFS RNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERL LMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILCGIIFVER RYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGPRVTINTA IGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPI PQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDV DHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRTSSLENHDQMSVNCRTLLSESPGKLHVEVSA DLTAINGLSYNQNLANGSYDLANRDFCQGNQLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK VSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNP SEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEKSFLQMYPVPLC |
| Q9UPY3-3 | MLAWESDHFLRILAENDNYCKHSTIVPENAAHQGANRTSSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLA NRDFCQGNQLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAVMPGTTDTIQVLKGRMDSEQSPS IGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS IFDPPVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYDQEHIRFIDNMLMGSGA FVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQ CIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCL KIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMD SGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSL |
Protein Functional Features |
| Main function of this protein. (from UniProt) |
| DICER1 (go to UniProt):Q9UPY3 |
| Retention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Accession_id | Subsection | Start | End | Funcitonal feature | Splicing information |
| Q9UPY3 | Domain | 51 | 227 | Note=Helicase ATP-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00541 | Type=Deletion;Start=14;End=1115 |
| Q9UPY3 | Domain | 433 | 602 | Note=Helicase C-terminal;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00542 | Type=Deletion;Start=14;End=1115 |
| Q9UPY3 | Domain | 630 | 722 | Note=Dicer dsRNA-binding fold;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00657 | Type=Deletion;Start=14;End=1115 |
| Q9UPY3 | Domain | 895 | 1042 | Note=PAZ;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00142 | Type=Deletion;Start=14;End=1115 |
| Q9UPY3 | Domain | 1666 | 1824 | Note=RNase III 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00177 | Type=Substitution;Start=1789;End=1922 |
| Q9UPY3 | Domain | 1849 | 1914 | Note=DRBM;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266 | Type=Substitution;Start=1789;End=1922 |
| Q9UPY3 | Region | 256 | 595 | Note=Required for interaction with PRKRA and TARBP2 | Type=Deletion;Start=14;End=1115 |
| Q9UPY3 | Region | 409 | 433 | Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=14;End=1115 |
| Q9UPY3 | Motif | 175 | 178 | Note=DECH box | Type=Deletion;Start=14;End=1115 |
| Q9UPY3 | Compositional bias | 412 | 427 | Note=Acidic residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite | Type=Deletion;Start=14;End=1115 |
Gene Isoform Structures and Expression Levels for DICER1 |
| Gene structures of our canonical and alternative spliced genes of DICER1 * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Expression levels of gene isoforms across GTEx. |
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| Expression levels of gene isoforms across TCGA. |
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Protein Structures |
| PDB and CIF files of the predicted protein structures * Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format. |
| 3D view using mol* of Q9UPY3-1 |
| 3D view using mol* of Q9UPY3-2 |
| 3D view using mol* of Q9UPY3-3 |
pLDDT Score Distribution |
| pLDDT score distribution of the predicted protein structures from AlphaFold2 * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
| pLDDT distribution across the protein length of Q9UPY3-1 |
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| pLDDT distribution across the protein length of Q9UPY3-2 |
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| pLDDT distribution across the protein length of Q9UPY3-3 |
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Ramachandran Plot of Protein Structures |
| Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide. |
| Ramachandran plot of Q9UPY3-1 |
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| Ramachandran plot of Q9UPY3-2 |
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Potential Active Site Information |
| The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite. |
| UniProt-id | Site score | Size | D score | Volume | Exposure | Enclosure | Contact | Phobic | Philic | Balance | Don/Acc | Residues |
| Q9UPY3-1 | 1.068 | 388 | 1.099 | 1169.287 | 0.511 | 0.765 | 0.996 | 0.938 | 0.919 | 1.02 | 1.004 | 29,30,32,33,34,35,36,37,45,47,64,65,66,67,68,210,2 36,237,239,240,241,243,244,247,248,249,250,451,479 ,481,482,483,484,485,488,489,490,491,494,495,498,4 99,501,502,503,505,506,509,521,522,523,524,525,526 ,527,528,543,544,547,548,550,551,552,553,554,583,5 86,587 |
| Q9UPY3-2 | 1.065 | 321 | 1.019 | 727.846 | 0.483 | 0.795 | 1.05 | 0.414 | 1.221 | 0.339 | 0.722 | 45,46,49,53,56,57,80,81,83,646,647,648,649,650,651 ,652,654,656,664,665,666,668,669,670,671,672,674,6 75,676,677,678,1329,1332,1333,1336,1337,1339,1340, 1642,1644,1645,1647,1648,1650,1651,1652,1661,1662, 1682,1685,1690,1691,1692,1693,1694,1695,1696,1698, 1699,1700,1702,1703,1704,1707,1711,1759,1761,1762 |
| Q9UPY3-3 | 1.027 | 712 | 1.029 | 2095.387 | 0.552 | 0.738 | 0.9 | 0.48 | 1.085 | 0.442 | 0.987 | 1,2,3,4,5,7,8,9,11,12,13,15,16,18,214,218,221,222, 230,234,235,237,238,239,240,242,243,245,246,249,25 0,251,252,348,351,352,354,355,356,358,360,361,455, 459,462,543,545,546,547,548,580,583,586,587,588,59 0,591,593,596,597,598,599,600,601,602,603,604,607, 608,611,632,634,635,636,638,639,640,641,642,643,64 5,646,649,663,666,670,673,674,677,678,680,681,684, 685,686,688,689,693,696,697,698,700,701,702,703,70 4,705,708,711,719,735,738,739,742,748,750,753,793, 796,797 |
Protein Structure and Feature Comparision |
| Protein Structure Comparision Using Template Modeling Scores (TM-score). |
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| Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green) |
| 3D view using mol* of Q9UPY3-1_Q9UPY3-1_5zak_A.pdb |
| Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green) |
| 3D view using mol* of Q9UPY3-1_5zak_A_Q9UPY3-2.pdb |
| 3D view using mol* of Q9UPY3-1_5zak_A_Q9UPY3-3.pdb |
| Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green) |
| 3D view using mol* of Q9UPY3-1_Q9UPY3-2.pdb |
| 3D view using mol* of Q9UPY3-1_Q9UPY3-3.pdb |
| Protein Feature Comparison of the protein sequendary structures among the protiens. |
| ./stats/secondary_structure/figure/Q9UPY3-1_vs_Q9UPY3-2.png |
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| ./stats/secondary_structure/figure/Q9UPY3-1_vs_Q9UPY3-3.png |
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| Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens. |
| ./stats/relative_asa/Q9UPY3-1_vs_Q9UPY3-2.png |
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| ./stats/relative_asa/Q9UPY3-1_vs_Q9UPY3-3.png |
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Protein-Protein Interaction |
| Interactors from UniProt. |
| Accession_id | Subsection | Start | End | Funcitonal feature | Splicing information |
| Q9UPY3 | Region | 256 | 595 | Note=Required for interaction with PRKRA and TARBP2 | Type=Deletion;Start=14;End=1115 |
| Interactors from STRING. |
| Gene name | Interactors |
Related Drugs to DICER1 |
| Drugs targeting this gene/protein. (DrugBank) |
| UniProt accession | Gene name | DrugBank ID | Drug name | Drug group | Actions |
Related Diseases to DICER1 |
| Previous studies relating to the alternative splicing of DICER1 and disease information from the MeSH term (PubMed) |
| Gene | PMID | Title | Abstract | MeSH ID | MeSH term |
| DICER1 | 15987463 | Alternative initiation and splicing in dicer gene expression in human breast cells. | Dicer is a ribonuclease that mediates RNA interference both at the transcriptional and the post-transcriptional levels. Human dicer gene expression is regulated in different tissues. Dicer is responsible for the synthesis of microRNAs and short temporal (st)RNAs that regulate the expression of many genes. Thus, understanding the control of the expression of the dicer gene is essential for the appreciation of double-stranded (ds)RNA-mediated pathways of gene expression. Human dicer mRNA has many upstream open reading frames (uORFs) at the 5'-leader sequences (the nucleotide sequence between the 5'-end and the start codon of the major ORF), and we studied whether these elements at the 5'-leader sequences regulate the expression of the dicer gene. | D001943 | Breast Neoplasms |
| DICER1 | 24711643 | Identifying biological pathways that underlie primordial short stature using network analysis. | Mutations in CUL7, OBSL1 and CCDC8, leading to disordered ubiquitination, cause one of the commonest primordial growth disorders, 3-M syndrome. This condition is associated with i) abnormal p53 function, ii) GH and/or IGF1 resistance, which may relate to failure to recycle signalling molecules, and iii) cellular IGF2 deficiency. However the exact molecular mechanisms that may link these abnormalities generating growth restriction remain undefined. In this study, we have used immunoprecipitation/mass spectrometry and transcriptomic studies to generate a 3-M 'interactome', to define key cellular pathways and biological functions associated with growth failure seen in 3-M. We identified 189 proteins which interacted with CUL7, OBSL1 and CCDC8, from which a network including 176 of these proteins was generated. To strengthen the association to 3-M syndrome, these proteins were compared with an inferred network generated from the genes that were differentially expressed in 3-M fibroblasts compared with controls. This resulted in a final 3-M network of 131 proteins, with the most significant biological pathway within the network being mRNA splicing/processing. We have shown using an exogenous insulin receptor (INSR) minigene system that alternative splicing of exon 11 is significantly changed in HEK293 cells with altered expression of CUL7, OBSL1 and CCDC8 and in 3-M fibroblasts. The net result is a reduction in the expression of the mitogenic INSR isoform in 3-M syndrome. From these preliminary data, we hypothesise that disordered ubiquitination could result in aberrant mRNA splicing in 3-M; however, further investigation is required to determine whether this contributes to growth failure. | D004392 | Dwarfism |
| DICER1 | 24711643 | Identifying biological pathways that underlie primordial short stature using network analysis. | Mutations in CUL7, OBSL1 and CCDC8, leading to disordered ubiquitination, cause one of the commonest primordial growth disorders, 3-M syndrome. This condition is associated with i) abnormal p53 function, ii) GH and/or IGF1 resistance, which may relate to failure to recycle signalling molecules, and iii) cellular IGF2 deficiency. However the exact molecular mechanisms that may link these abnormalities generating growth restriction remain undefined. In this study, we have used immunoprecipitation/mass spectrometry and transcriptomic studies to generate a 3-M 'interactome', to define key cellular pathways and biological functions associated with growth failure seen in 3-M. We identified 189 proteins which interacted with CUL7, OBSL1 and CCDC8, from which a network including 176 of these proteins was generated. To strengthen the association to 3-M syndrome, these proteins were compared with an inferred network generated from the genes that were differentially expressed in 3-M fibroblasts compared with controls. This resulted in a final 3-M network of 131 proteins, with the most significant biological pathway within the network being mRNA splicing/processing. We have shown using an exogenous insulin receptor (INSR) minigene system that alternative splicing of exon 11 is significantly changed in HEK293 cells with altered expression of CUL7, OBSL1 and CCDC8 and in 3-M fibroblasts. The net result is a reduction in the expression of the mitogenic INSR isoform in 3-M syndrome. From these preliminary data, we hypothesise that disordered ubiquitination could result in aberrant mRNA splicing in 3-M; however, further investigation is required to determine whether this contributes to growth failure. | D006130 | Growth Disorders |
| DICER1 | 24711643 | Identifying biological pathways that underlie primordial short stature using network analysis. | Mutations in CUL7, OBSL1 and CCDC8, leading to disordered ubiquitination, cause one of the commonest primordial growth disorders, 3-M syndrome. This condition is associated with i) abnormal p53 function, ii) GH and/or IGF1 resistance, which may relate to failure to recycle signalling molecules, and iii) cellular IGF2 deficiency. However the exact molecular mechanisms that may link these abnormalities generating growth restriction remain undefined. In this study, we have used immunoprecipitation/mass spectrometry and transcriptomic studies to generate a 3-M 'interactome', to define key cellular pathways and biological functions associated with growth failure seen in 3-M. We identified 189 proteins which interacted with CUL7, OBSL1 and CCDC8, from which a network including 176 of these proteins was generated. To strengthen the association to 3-M syndrome, these proteins were compared with an inferred network generated from the genes that were differentially expressed in 3-M fibroblasts compared with controls. This resulted in a final 3-M network of 131 proteins, with the most significant biological pathway within the network being mRNA splicing/processing. We have shown using an exogenous insulin receptor (INSR) minigene system that alternative splicing of exon 11 is significantly changed in HEK293 cells with altered expression of CUL7, OBSL1 and CCDC8 and in 3-M fibroblasts. The net result is a reduction in the expression of the mitogenic INSR isoform in 3-M syndrome. From these preliminary data, we hypothesise that disordered ubiquitination could result in aberrant mRNA splicing in 3-M; however, further investigation is required to determine whether this contributes to growth failure. | D009123 | Muscle Hypotonia |
Clinically important variants in DICER1 |
| (ClinVar, 04/20/2024) |
| accession_id | uniprot_id | gene_name | Type | Variant | Clinical_significance |
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