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Center for Computational Systems Medicine
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Protein Summary

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AS Summary

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Protein Functional Features

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Gene Isoform Structures and Expression Levels

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Protein Structures

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pLDDT Score Distribution

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Ramachandran Plot of Protein Structures

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Potential Active Site Information

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Protein Structure and Feature Comparision

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Protein-Protein Interaction

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Related Drugs

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Related Diseases

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Clinically Important Variants

Protein:G6PD

Protein Summary

check button Gene summary
Gene name: G6PD
ASpdb.0 ID: 2539
Gene
Gene symbol

G6PD

Gene ID

2539

Gene nameglucose-6-phosphate dehydrogenase
SynonymsG6PD1
Cytomap

Xq28

Type of geneprotein-coding
Descriptionglucose-6-phosphate 1-dehydrogenaseepididymis secretory sperm binding protein
Modification date20240413
UniProtAcc

P11413


check button Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
GeneG6PD

GO:0004345

glucose-6-phosphate dehydrogenase activity

15858258|35122041|38066190

GeneG6PD

GO:0005536

glucose binding

15858258

GeneG6PD

GO:0005737

cytoplasm

-

GeneG6PD

GO:0005829

cytosol

743300|35122041

GeneG6PD

GO:0006098

pentose-phosphate shunt

2297768

GeneG6PD

GO:0006739

NADP metabolic process

15858258

GeneG6PD

GO:0009898

cytoplasmic side of plasma membrane

743300

GeneG6PD

GO:0019322

pentose biosynthetic process

5643703

GeneG6PD

GO:0034451

centriolar satellite

-

GeneG6PD

GO:0043231

intracellular membrane-bounded organelle

-

GeneG6PD

GO:0050661

NADP binding

15858258

GeneG6PD

GO:0051156

glucose 6-phosphate metabolic process

15858258|38066190



AS Summary

check button Information of the canonical protein with experimentally identified structure from PDB (2023).
UniProt AccFile namePDB IDMethodResolutionChainStartEnd
P11413-1P11413-1_1qki_F.pdb1QKIX-ray3.0F8511

check button ASpdb's canonical and alternatively spliced isoform information.
accession_idgene_namecanonical_idalternative_idcanonical_lengthalternative_lengthcanonical_startcanonical_endtypeoriginalSEQvariationSEQalternative_startalternative_end
P11413G6PDP11413-1P11413-2515561257257SubstitutionRRGPGRQGGSGSESCSLSLGSLVWGPHALEPGEQGGELRRALASSVPR257303
P11413G6PDP11413-1P11413-351554511SubstitutionMMGRRGSAPGNGRTLRGCERGGRRRRSADSVM131

check buttonMultiple sequence alignment of our canonical and alternatively spliced G6PD

check button Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of G6PD
UniProt-idENSGENSTENSP
P11413-1ENSG00000160211.20ENST00000393562.10ENSP00000377192.3
P11413-1ENSG00000160211.20ENST00000393564.7ENSP00000377194.2
P11413-1ENSG00000160211.20ENST00000696429.1ENSP00000512624.1
P11413-1ENSG00000160211.20ENST00000696430.1ENSP00000512625.1
P11413-2ENSG00000160211.20ENST00000369620.6ENSP00000358633.2

UniProt-idNM IDNP ID
P11413-1NM_001042351.2NP_001035810.1
P11413-3NM_000402.4NP_000393.4

check buttonAmino acid sequences of our canonical and alternatively spliced G6PD
accession_idProtein sequence
P11413-1MAEQVALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKA
TPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSS
DRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCL
VAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGK
ALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLILDVFCGSQM
P11413-2MAEQVALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKA
TPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSS
DRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRGPGRQGGSGSESC
SLSLGSLVWGPHALEPGEQGGELRRALASSVPRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPDG
EGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKM
MTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADE
P11413-3MGRRGSAPGNGRTLRGCERGGRRRRSADSVMAEQVALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGL
LPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAV
TKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEP
FGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPR
GSTTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESEL
DLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADELMKRVGFQYEGTYKWV

Protein Functional Features

check buttonMain function of this protein. (from UniProt)
G6PD (go to UniProt):P11413

check buttonRetention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
Accession_idSubsectionStartEndFuncitonal featureSplicing information


Gene Isoform Structures and Expression Levels for G6PD

check buttonGene structures of our canonical and alternative spliced genes of G6PD
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
gene isoform structure of G6PD

check button Expression levels of gene isoforms across GTEx.
gtex expression

check button Expression levels of gene isoforms across TCGA.
tcga expression


Protein Structures

check button PDB and CIF files of the predicted protein structures
* Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
3D view using mol* of P11413-1
3D view using mol* of P11413-2
3D view using mol* of P11413-3


pLDDT Score Distribution

check button pLDDT score distribution of the predicted protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
pLDDT distribution across the protein length of P11413-1
all structure
pLDDT distribution across the protein length of P11413-2
all structure
pLDDT distribution across the protein length of P11413-3
all structure


Ramachandran Plot of Protein Structures


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide.
Ramachandran plot of P11413-1
all structure
Ramachandran plot of P11413-3
all structure

Potential Active Site Information


check button The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite.
UniProt-idSite scoreSizeD scoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues
P11413-11.0571591.124577.6120.6740.6840.8150.8760.6951.261.3376,7,8,9,12,13,15,16,19,20,22,55,58,60,206,209,210,
212,213,216,217,275,276,278,279,281,424,428,430,43
1,432,433,434,438,439,442,443,448,451
P11413-21.021061.038280.9170.5410.7260.9020.6061.0340.5860.841175,251,252,253,254,255,256,257,260,261,262,351,37
8,379,380,381,515,518,519,522,523
P11413-31.0551791.011623.5740.5410.7811.0470.6731.2190.5520.66368,70,71,72,73,77,101,102,103,142,171,172,173,174,
177,200,201,202,203,204,229,230,231,232,235,267,26
8,269,271,272,273,274,276,279,280,283,287,288,289,
291,292,293,295,296,299,322,390,395,397,425,467,48
3,488,491,492

Protein Structure and Feature Comparision


check button Protein Structure Comparision Using Template Modeling Scores (TM-score).
all structure

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green)
3D view using mol* of P11413-1_P11413-1_1qki_F.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of P11413-1_1qki_F_P11413-2.pdb
3D view using mol* of P11413-1_1qki_F_P11413-3.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of P11413-1_P11413-2.pdb
3D view using mol* of P11413-1_P11413-3.pdb

check button Protein Feature Comparison of the protein sequendary structures among the protiens.
./stats/secondary_structure/figure/P11413-1_vs_P11413-2.png
all structure<
./stats/secondary_structure/figure/P11413-1_vs_P11413-3.png
all structure<

check button Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens.
./stats/relative_asa/P11413-1_vs_P11413-2.png
all structure<
./stats/relative_asa/P11413-1_vs_P11413-3.png
all structure<


Protein-Protein Interaction


check button Interactors from UniProt.
Accession_idSubsectionStartEndFuncitonal featureSplicing information


check button Interactors from STRING.
Gene nameInteractors


Related Drugs to G6PD


check button Drugs targeting this gene/protein.
(DrugBank)
UniProt accessionGene nameDrugBank IDDrug nameDrug groupActions
P11413G6PDDB0510716-Bromoepiandrosteroneinvestigational
P11413G6PDDB03085Glycolic acidapproved, investigationalinhibitor
P11413G6PDDB03461Nicotinamide adenine dinucleotide phosphateexperimental
P11413G6PDDB11638Artenimolapproved, experimental, investigationalligand

Related Diseases to G6PD


check button Previous studies relating to the alternative splicing of G6PD and disease information from the MeSH term (PubMed)
GenePMIDTitleAbstractMeSH IDMeSH term


Clinically important variants in G6PD


check button (ClinVar, 04/20/2024)
accession_iduniprot_idgene_nameTypeVariantClinical_significance
P11413P11413-3G6PDsingle nucleotide variantp.Asn156AspConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Asn156AspConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Val98MetPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Val98MetPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg315HisPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg315HisPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ala365ThrPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ala365ThrPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Glu186LysConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Glu186LysConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Gly193SerPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly193SerPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ser218PhePathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ser218PhePathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asp88AsnPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asp88AsnPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg423HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg423HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly477ArgPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly477ArgPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asp312HisConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Asp312HisConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Phe246LeuLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Phe246LeuLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Lys416GluConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Lys416GluConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Arg417HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg417HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Cys415ArgPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Cys415ArgPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly440CysPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly440CysPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg484HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg484HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg489LeuPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg489LeuPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Glu398LysPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Glu398LysPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asp211ValPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asp211ValPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Val243LeuPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Val243LeuPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Pro383SerPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Pro383SerPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Val321MetPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Val321MetPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg493HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg493HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asn393LysLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asn393LysLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg228CysPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg228CysPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asn195AspPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Asn195AspPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg228ProLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg228ProLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg257GlnConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Arg257GlnConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Arg417CysPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg417CysPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Val424LeuLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Val424LeuLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly440AspPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly440AspPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg469ProConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Arg469ProConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Glu347LysPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Glu347LysPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ile78ThrPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ile78ThrPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.His62ArgPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.His62ArgPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly161ValPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Gly161ValPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Leu372PheConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Leu372PheConflicting classifications of pathogenicity
P11413P11413-3G6PDsingle nucleotide variantp.Ala74GlyPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ala74GlyPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Phe203LeuPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Phe203LeuPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Pro497ArgLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Pro497ArgLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ala391ValLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Ala391ValLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Cys299TyrLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Cys299TyrLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Tyr352HisLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Tyr352HisLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Pro511ArgLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Pro511ArgLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Tyr100HisPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Tyr100HisPathogenic/Likely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg228HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg228HisPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg489ProPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg489ProPathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg3TrpLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg3TrpLikely pathogenic
P11413P11413-3G6PDsingle nucleotide variantp.Arg4GlyUncertain significance
P11413P11413-3G6PDsingle nucleotide variantp.Arg4GlyUncertain significance