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Center for Computational Systems Medicine
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Protein Summary

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AS Summary

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Protein Functional Features

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Gene Isoform Structures and Expression Levels

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Protein Structures

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pLDDT Score Distribution

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Ramachandran Plot of Protein Structures

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Potential Active Site Information

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Protein Structure and Feature Comparision

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Protein-Protein Interaction

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Related Drugs

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Related Diseases

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Clinically Important Variants

Protein:ADGRE2

Protein Summary

check button Gene summary
Gene name: ADGRE2
ASpdb.0 ID: 30817
Gene
Gene symbol

ADGRE2

Gene ID

30817

Gene nameadhesion G protein-coupled receptor E2
SynonymsCD312|CD97|EMR2|VBU
Cytomap

19p13.12

Type of geneprotein-coding
Descriptionadhesion G protein-coupled receptor E2CD97 antigenEGF-like module-containing mucin-like hormone receptor-like 2Leukocyte antigen CD97egf-like module containing, mucin-like, hormone receptor-like 2
Modification date20240411
UniProtAcc

Q9UHX3


check button Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
GeneADGRE2

GO:0031256

leading edge membrane

17928360



AS Summary

check button Information of the canonical protein with experimentally identified structure from PDB (2023).
UniProt AccFile namePDB IDMethodResolutionChainStartEnd
Q9UHX3-1Q9UHX3-1_2box_A.pdb2BOXX-ray2.5A27260

check button ASpdb's canonical and alternatively spliced isoform information.
accession_idgene_namecanonical_idalternative_idcanonical_lengthalternative_lengthcanonical_startcanonical_endtypeoriginalSEQvariationSEQalternative_startalternative_end
Q9UHX3ADGRE2Q9UHX3-1Q9UHX3-2823812397407Deletionnonenone396396
Q9UHX3ADGRE2Q9UHX3-1Q9UHX3-3823774163211Deletionnonenone162162
Q9UHX3ADGRE2Q9UHX3-1Q9UHX3-4823730119211Deletionnonenone118118
Q9UHX3ADGRE2Q9UHX3-1Q9UHX3-5823681119260Deletionnonenone118118
Q9UHX3ADGRE2Q9UHX3-1Q9UHX3-6823765473530Deletionnonenone472472

check buttonMultiple sequence alignment of our canonical and alternatively spliced ADGRE2

check button Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of ADGRE2
UniProt-idENSGENSTENSP
Q9UHX3-1ENSG00000127507.18ENST00000315576.8ENSP00000319883.3
Q9UHX3-2ENSG00000127507.18ENST00000596991.6ENSP00000472280.2
Q9UHX3-3ENSG00000127507.18ENST00000594294.5ENSP00000470725.1
Q9UHX3-4ENSG00000127507.18ENST00000594076.5ENSP00000472735.1
Q9UHX3-5ENSG00000127507.18ENST00000595839.5ENSP00000469277.1
Q9UHX3-6ENSG00000127507.18ENST00000392965.7ENSP00000376692.3

UniProt-idNM IDNP ID
Q9UHX3-1NM_013447.3NP_038475.2
Q9UHX3-6NM_001271052.1NP_001257981.1

check buttonAmino acid sequences of our canonical and alternatively spliced ADGRE2
accession_idProtein sequence
Q9UHX3-1MGGRVFLVFLAFCVWLTLPGAETQDSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEG
SYDCVCSPGYEPVSGAKTFKNESENTCQDVDECQQNPRLCKSYGTCVNTLGSYTCQCLPGFKLKPEDPKLCTDVNECTSGQNPCHSSTHC
LNNVGSYQCRCRPGWQPIPGSPNGPNNTVCEDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCEDMTFSTWTPP
PGVHSQTLSRFFDKVQDLGRDYKPGLANNTIQSILQALDELLEAPGDLETLPRLQQHCVASHLLDGLEDVLRGLSKNLSNGLLNFSYPAG
TELSLEVQKQVDRSVTLRQNQAVMQLDWNQAQKSGDPGPSVVGLVSIPGMGKLLAEAPLVLEPEKQMLLHETHQGLLQDGSPILLSDVIS
AFLSNNDTQNLSSPVTFTFSHRSVIPRQKVLCVFWEHGQNGCGHWATTGCSTIGTRDTSTICRCTHLSSFAVLMAHYDVQEEDPVLTVIT
YMGLSVSLLCLLLAALTFLLCKAIQNTSTSLHLQLSLCLFLAHLLFLVAIDQTGHKVLCSIIAGTLHYLYLATLTWMLLEALYLFLTARN
LTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGFIWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSE
VSTLRNTRMLAFKATAQLFILGCTWCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESEMHTLSS
Q9UHX3-2MGGRVFLVFLAFCVWLTLPGAETQDSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEG
SYDCVCSPGYEPVSGAKTFKNESENTCQDVDECQQNPRLCKSYGTCVNTLGSYTCQCLPGFKLKPEDPKLCTDVNECTSGQNPCHSSTHC
LNNVGSYQCRCRPGWQPIPGSPNGPNNTVCEDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCEDMTFSTWTPP
PGVHSQTLSRFFDKVQDLGRDYKPGLANNTIQSILQALDELLEAPGDLETLPRLQQHCVASHLLDGLEDVLRGLSKNLSNGLLNFSYPAG
TELSLEVQKQVDRSVTLRQNQAVMQLDWNQAQKSGDPGMGKLLAEAPLVLEPEKQMLLHETHQGLLQDGSPILLSDVISAFLSNNDTQNL
SSPVTFTFSHRSVIPRQKVLCVFWEHGQNGCGHWATTGCSTIGTRDTSTICRCTHLSSFAVLMAHYDVQEEDPVLTVITYMGLSVSLLCL
LLAALTFLLCKAIQNTSTSLHLQLSLCLFLAHLLFLVAIDQTGHKVLCSIIAGTLHYLYLATLTWMLLEALYLFLTARNLTVVNYSSINR
FMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGFIWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLA
FKATAQLFILGCTWCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESEMHTLSSSAKADTSKPST
Q9UHX3-3MGGRVFLVFLAFCVWLTLPGAETQDSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEG
SYDCVCSPGYEPVSGAKTFKNESENTCQDVDECQQNPRLCKSYGTCVNTLGSYTCQCLPGFKLKPEDPKLCTDVDECSSGQHQCDSSTVC
FNTVGSYSCRCRPGWKPRHGIPNNQKDTVCEDMTFSTWTPPPGVHSQTLSRFFDKVQDLGRDYKPGLANNTIQSILQALDELLEAPGDLE
TLPRLQQHCVASHLLDGLEDVLRGLSKNLSNGLLNFSYPAGTELSLEVQKQVDRSVTLRQNQAVMQLDWNQAQKSGDPGPSVVGLVSIPG
MGKLLAEAPLVLEPEKQMLLHETHQGLLQDGSPILLSDVISAFLSNNDTQNLSSPVTFTFSHRSVIPRQKVLCVFWEHGQNGCGHWATTG
CSTIGTRDTSTICRCTHLSSFAVLMAHYDVQEEDPVLTVITYMGLSVSLLCLLLAALTFLLCKAIQNTSTSLHLQLSLCLFLAHLLFLVA
IDQTGHKVLCSIIAGTLHYLYLATLTWMLLEALYLFLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQ
PEKGFIWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCTWCLGILQVGPAARVMAYLFTIINSL
Q9UHX3-4MGGRVFLVFLAFCVWLTLPGAETQDSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEG
SYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCEDMTFSTWTPPPGV
HSQTLSRFFDKVQDLGRDYKPGLANNTIQSILQALDELLEAPGDLETLPRLQQHCVASHLLDGLEDVLRGLSKNLSNGLLNFSYPAGTEL
SLEVQKQVDRSVTLRQNQAVMQLDWNQAQKSGDPGPSVVGLVSIPGMGKLLAEAPLVLEPEKQMLLHETHQGLLQDGSPILLSDVISAFL
SNNDTQNLSSPVTFTFSHRSVIPRQKVLCVFWEHGQNGCGHWATTGCSTIGTRDTSTICRCTHLSSFAVLMAHYDVQEEDPVLTVITYMG
LSVSLLCLLLAALTFLLCKAIQNTSTSLHLQLSLCLFLAHLLFLVAIDQTGHKVLCSIIAGTLHYLYLATLTWMLLEALYLFLTARNLTV
VNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGFIWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVST
LRNTRMLAFKATAQLFILGCTWCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESEMHTLSSSAK
Q9UHX3-5MGGRVFLVFLAFCVWLTLPGAETQDSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEG
SYDCVCSPGYEPVSGAKTFKNESENTCQDMTFSTWTPPPGVHSQTLSRFFDKVQDLGRDYKPGLANNTIQSILQALDELLEAPGDLETLP
RLQQHCVASHLLDGLEDVLRGLSKNLSNGLLNFSYPAGTELSLEVQKQVDRSVTLRQNQAVMQLDWNQAQKSGDPGPSVVGLVSIPGMGK
LLAEAPLVLEPEKQMLLHETHQGLLQDGSPILLSDVISAFLSNNDTQNLSSPVTFTFSHRSVIPRQKVLCVFWEHGQNGCGHWATTGCST
IGTRDTSTICRCTHLSSFAVLMAHYDVQEEDPVLTVITYMGLSVSLLCLLLAALTFLLCKAIQNTSTSLHLQLSLCLFLAHLLFLVAIDQ
TGHKVLCSIIAGTLHYLYLATLTWMLLEALYLFLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEK
GFIWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCTWCLGILQVGPAARVMAYLFTIINSLQGV
Q9UHX3-6MGGRVFLVFLAFCVWLTLPGAETQDSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEG
SYDCVCSPGYEPVSGAKTFKNESENTCQDVDECQQNPRLCKSYGTCVNTLGSYTCQCLPGFKLKPEDPKLCTDVNECTSGQNPCHSSTHC
LNNVGSYQCRCRPGWQPIPGSPNGPNNTVCEDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCEDMTFSTWTPP
PGVHSQTLSRFFDKVQDLGRDYKPGLANNTIQSILQALDELLEAPGDLETLPRLQQHCVASHLLDGLEDVLRGLSKNLSNGLLNFSYPAG
TELSLEVQKQVDRSVTLRQNQAVMQLDWNQAQKSGDPGPSVVGLVSIPGMGKLLAEAPLVLEPEKQMLLHETHQGLLQDGSPILLSDVIS
AFLSNNDTQNLSSPVTFTFSHREEDPVLTVITYMGLSVSLLCLLLAALTFLLCKAIQNTSTSLHLQLSLCLFLAHLLFLVAIDQTGHKVL
CSIIAGTLHYLYLATLTWMLLEALYLFLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGFIWGF
LGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCTWCLGILQVGPAARVMAYLFTIINSLQGVFIFLVY

Protein Functional Features

check buttonMain function of this protein. (from UniProt)
ADGRE2 (go to UniProt):Q9UHX3

check buttonRetention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
Accession_idSubsectionStartEndFuncitonal featureSplicing information
Q9UHX3Topological domain24540Note=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305Type=Deletion;Start=397;End=407
Q9UHX3Topological domain24540Note=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305Type=Deletion;Start=163;End=211
Q9UHX3Topological domain24540Note=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305Type=Deletion;Start=119;End=211
Q9UHX3Topological domain24540Note=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305Type=Deletion;Start=119;End=260
Q9UHX3Topological domain24540Note=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305Type=Deletion;Start=473;End=530
Q9UHX3Domain119162Note=EGF-like 3%3B calcium-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00076Type=Deletion;Start=119;End=211
Q9UHX3Domain119162Note=EGF-like 3%3B calcium-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00076Type=Deletion;Start=119;End=260
Q9UHX3Domain163211Note=EGF-like 4%3B calcium-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00076Type=Deletion;Start=163;End=211
Q9UHX3Domain163211Note=EGF-like 4%3B calcium-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00076Type=Deletion;Start=119;End=211
Q9UHX3Domain163211Note=EGF-like 4%3B calcium-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00076Type=Deletion;Start=119;End=260
Q9UHX3Domain212260Note=EGF-like 5%3B calcium-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00076Type=Deletion;Start=119;End=260
Q9UHX3Domain479529Note=GPS;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00098Type=Deletion;Start=473;End=530


Gene Isoform Structures and Expression Levels for ADGRE2

check buttonGene structures of our canonical and alternative spliced genes of ADGRE2
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
gene isoform structure of ADGRE2

check button Expression levels of gene isoforms across GTEx.
gtex expression

check button Expression levels of gene isoforms across TCGA.
tcga expression


Protein Structures

check button PDB and CIF files of the predicted protein structures
* Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
3D view using mol* of Q9UHX3-1
3D view using mol* of Q9UHX3-2
3D view using mol* of Q9UHX3-3
3D view using mol* of Q9UHX3-4
3D view using mol* of Q9UHX3-5
3D view using mol* of Q9UHX3-6


pLDDT Score Distribution

check button pLDDT score distribution of the predicted protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
pLDDT distribution across the protein length of Q9UHX3-1
all structure
pLDDT distribution across the protein length of Q9UHX3-2
all structure
pLDDT distribution across the protein length of Q9UHX3-3
all structure
pLDDT distribution across the protein length of Q9UHX3-4
all structure
pLDDT distribution across the protein length of Q9UHX3-5
all structure
pLDDT distribution across the protein length of Q9UHX3-6
all structure


Ramachandran Plot of Protein Structures


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide.
Ramachandran plot of Q9UHX3-1
all structure
Ramachandran plot of Q9UHX3-2
all structure
Ramachandran plot of Q9UHX3-3
all structure

Potential Active Site Information


check button The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite.
UniProt-idSite scoreSizeD scoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues
Q9UHX3-11.1051191.138326.5360.5160.8091.0661.3490.881.5330.596557,558,564,566,568,569,572,617,620,621,623,624,62
7,696,699,703,706,707,725,726,728,729,730,731,733,
734,737,738,742,778,782,785
Q9UHX3-21.1191691.187581.0420.5850.760.9171.4870.642.3251.397517,519,520,521,522,525,526,529,530,533,568,572,57
5,579,580,595,599,602,661,663,664,666,674,677,678,
681,730,734,737,738,740,746,749,752,753,756,757,75
9
Q9UHX3-31.1011741.156550.5150.5320.7640.9431.4230.7451.9091.043481,482,483,484,487,488,491,492,495,534,537,541,54
2,557,561,626,628,636,639,640,643,696,699,700,702,
708,711,714,715,718,719,721
Q9UHX3-41.0513111.092904.4910.5430.7240.940.990.8671.1421.27338,339,340,341,342,343,344,345,433,434,435,436,43
7,438,439,440,443,444,447,448,451,486,490,493,494,
497,498,500,503,506,507,513,517,520,524,575,577,57
8,579,580,581,582,584,586,592,595,596,599,648,652,
655,656,658,661,663,664,667,668,670,671,674,675,67
7
Q9UHX3-51.1132001.166629.0620.4720.7821.0181.150.7441.5461.342388,389,390,391,394,395,398,399,402,441,444,445,44
6,448,449,464,468,532,533,535,543,546,547,603,606,
607,609,610,615,618,619,621,622,625,626
Q9UHX3-61.0851451.161485.3450.6310.7010.8281.3840.6112.2651.847473,474,476,478,479,482,483,486,521,525,528,532,53
3,548,552,555,617,619,627,630,631,634,683,687,690,
691,693,699,702,705,706,709,710,712

Protein Structure and Feature Comparision


check button Protein Structure Comparision Using Template Modeling Scores (TM-score).
all structure

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green)
3D view using mol* of Q9UHX3-1_Q9UHX3-1_2box_A.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q9UHX3-1_2box_A_Q9UHX3-2.pdb
3D view using mol* of Q9UHX3-1_2box_A_Q9UHX3-3.pdb
3D view using mol* of Q9UHX3-1_2box_A_Q9UHX3-4.pdb
3D view using mol* of Q9UHX3-1_2box_A_Q9UHX3-5.pdb
3D view using mol* of Q9UHX3-1_2box_A_Q9UHX3-6.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q9UHX3-1_Q9UHX3-2.pdb
3D view using mol* of Q9UHX3-1_Q9UHX3-3.pdb
3D view using mol* of Q9UHX3-1_Q9UHX3-4.pdb
3D view using mol* of Q9UHX3-1_Q9UHX3-5.pdb
3D view using mol* of Q9UHX3-1_Q9UHX3-6.pdb

check button Protein Feature Comparison of the protein sequendary structures among the protiens.
./stats/secondary_structure/figure/Q9UHX3-1_vs_Q9UHX3-2.png
all structure<
./stats/secondary_structure/figure/Q9UHX3-1_vs_Q9UHX3-3.png
all structure<
./stats/secondary_structure/figure/Q9UHX3-1_vs_Q9UHX3-4.png
all structure<
./stats/secondary_structure/figure/Q9UHX3-1_vs_Q9UHX3-5.png
all structure<
./stats/secondary_structure/figure/Q9UHX3-1_vs_Q9UHX3-6.png
all structure<

check button Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens.
./stats/relative_asa/Q9UHX3-1_vs_Q9UHX3-2.png
all structure<
./stats/relative_asa/Q9UHX3-1_vs_Q9UHX3-3.png
all structure<
./stats/relative_asa/Q9UHX3-1_vs_Q9UHX3-4.png
all structure<
./stats/relative_asa/Q9UHX3-1_vs_Q9UHX3-5.png
all structure<
./stats/relative_asa/Q9UHX3-1_vs_Q9UHX3-6.png
all structure<


Protein-Protein Interaction


check button Interactors from UniProt.
Accession_idSubsectionStartEndFuncitonal featureSplicing information


check button Interactors from STRING.
Gene nameInteractors


Related Drugs to ADGRE2


check button Drugs targeting this gene/protein.
(DrugBank)
UniProt accessionGene nameDrugBank IDDrug nameDrug groupActions

Related Diseases to ADGRE2


check button Previous studies relating to the alternative splicing of ADGRE2 and disease information from the MeSH term (PubMed)
GenePMIDTitleAbstractMeSH IDMeSH term


Clinically important variants in ADGRE2


check button (ClinVar, 04/20/2024)
accession_iduniprot_idgene_nameTypeVariantClinical_significance