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Center for Computational Systems Medicine
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Protein Summary

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AS Summary

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Protein Functional Features

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Gene Isoform Structures and Expression Levels

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Protein Structures

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pLDDT Score Distribution

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Ramachandran Plot of Protein Structures

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Potential Active Site Information

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Protein Structure and Feature Comparision

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Protein-Protein Interaction

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Related Drugs

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Related Diseases

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Clinically Important Variants

Protein:LEPR

Protein Summary

check button Gene summary
Gene name: LEPR
ASpdb.0 ID: 3953
Gene
Gene symbol

LEPR

Gene ID

3953

Gene nameleptin receptor
SynonymsCD295|LEP-R|LEPRD|OB-R|OBR
Cytomap

1p31.3

Type of geneprotein-coding
Descriptionleptin receptorOB receptorhuB219
Modification date20240310
UniProtAcc

P48357


check button Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
GeneLEPR

GO:0001934

positive regulation of protein phosphorylation

27037668

GeneLEPR

GO:0010507

negative regulation of autophagy

25060689

GeneLEPR

GO:0033210

leptin-mediated signaling pathway

27037668

GeneLEPR

GO:0038021

leptin receptor activity

20977476|27037668

GeneLEPR

GO:0043235

receptor complex

23382219

GeneLEPR

GO:0051049

regulation of transport

20977476



AS Summary

check button Information of the canonical protein with experimentally identified structure from PDB (2023).
UniProt AccFile namePDB IDMethodResolutionChainStartEnd
P48357-1P48357-1_3v6o_A.pdb3V6OX-ray1.95A431633

check button ASpdb's canonical and alternatively spliced isoform information.
accession_idgene_namecanonical_idalternative_idcanonical_lengthalternative_lengthcanonical_startcanonical_endtypeoriginalSEQvariationSEQalternative_startalternative_end
P48357LEPRP48357-1P48357-21165896892896SubstitutionPETFERTDIL892896
P48357LEPRP48357-1P48357-211658968971165Deletionnonenone896896
P48357LEPRP48357-1P48357-31165958892958SubstitutionPETFEHLFIKHTASVTCGPLLLEPETISEDISVDTSWKNKDEMMPTTVVSLLSTTDLEKGSVCISDQMLEGSMFVKSHHHSLISSTQGHKHCGRPQGPLHRKTRDLCSLVYLLTLPPLLSYDPAKSPSVRNTQE892958
P48357LEPRP48357-1P48357-311659589591165Deletionnonenone958958
P48357LEPRP48357-1P48357-41165906892906SubstitutionPETFEHLFIKHTASVKMPGTKELLGGGWLT892906
P48357LEPRP48357-1P48357-411659069071165Deletionnonenone906906
P48357LEPRP48357-1P48357-511658398401165Deletionnonenone839839

check buttonMultiple sequence alignment of our canonical and alternatively spliced LEPR

check button Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of LEPR
UniProt-idENSGENSTENSP
P48357-1ENSG00000116678.20ENST00000349533.11ENSP00000330393.7
P48357-2ENSG00000116678.20ENST00000371060.7ENSP00000360099.3
P48357-2ENSG00000116678.20ENST00000616738.4ENSP00000483390.1
P48357-3ENSG00000116678.20ENST00000371059.7ENSP00000360098.3
P48357-4ENSG00000116678.20ENST00000344610.12ENSP00000340884.8
P48357-4ENSG00000116678.20ENST00000371058.1ENSP00000360097.1

UniProt-idNM IDNP ID
P48357-1NM_002303.5NP_002294.2
P48357-2NM_001003679.3NP_001003679.1
P48357-2NM_001198689.1NP_001185618.1
P48357-3NM_001003680.3NP_001003680.1
P48357-3NM_001198687.1NP_001185616.1
P48357-4NM_001198688.1NP_001185617.1

check buttonAmino acid sequences of our canonical and alternatively spliced LEPR
accession_idProtein sequence
P48357-1MICQKFCVVLLHWEFIYVITAFNLSYPITPWRFKLSCMPPNSTYDYFLLPAGLSKNTSNSNGHYETAVEPKFNSSGTHFSNLSKTTFHCC
FRSEQDRNCSLCADNIEGKTFVSTVNSLVFQQIDANWNIQCWLKGDLKLFICYVESLFKNLFRNYNYKVHLLYVLPEVLEDSPLVPQKGS
FQMVHCNCSVHECCECLVPVPTAKLNDTLLMCLKITSGGVIFQSPLMSVQPINMVKPDPPLGLHMEITDDGNLKISWSSPPLVPFPLQYQ
VKYSENSTTVIREADKIVSATSLLVDSILPGSSYEVQVRGKRLDGPGIWSDWSTPRVFTTQDVIYFPPKILTSVGSNVSFHCIYKKENKI
VPSKEIVWWMNLAEKIPQSQYDVVSDHVSKVTFFNLNETKPRGKFTYDAVYCCNEHECHHRYAELYVIDVNINISCETDGYLTKMTCRWS
TSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPP
SSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY
TVVMDIKVPMRGPEFWRIINGDTMKKEKNVTLLWKPLMKNDSLCSVQRYVINHHTSCNGTWSEDVGNHTKFTFLWTEQAHTVTVLAINSI
GASVANFNLTFSWPMSKVNIVQSLSAYPLNSSCVIVSWILSPSDYKLMYFIIEWKNLNEDGEIKWLRISSSVKKYYIHDHFIPIEKYQFS
LYPIFMEGVGKPKIINSFTQDDIEKHQSDAGLYVIVPVIISSSILLLGTLLISHQRMKKLFWEDVPNPKNCSWAQGLNFQKPETFEHLFI
KHTASVTCGPLLLEPETISEDISVDTSWKNKDEMMPTTVVSLLSTTDLEKGSVCISDQFNSVNFSEAEGTEVTYEDESQRQPFVKYATLI
SNSKPSETGEEQGLINSSVTKCFSSKNSPLKDSFSNSSWEIEAQAFFILSDQHPNIISPHLTFSEGLDELLKLEGNFPEENNDKKSIYYL
P48357-2MICQKFCVVLLHWEFIYVITAFNLSYPITPWRFKLSCMPPNSTYDYFLLPAGLSKNTSNSNGHYETAVEPKFNSSGTHFSNLSKTTFHCC
FRSEQDRNCSLCADNIEGKTFVSTVNSLVFQQIDANWNIQCWLKGDLKLFICYVESLFKNLFRNYNYKVHLLYVLPEVLEDSPLVPQKGS
FQMVHCNCSVHECCECLVPVPTAKLNDTLLMCLKITSGGVIFQSPLMSVQPINMVKPDPPLGLHMEITDDGNLKISWSSPPLVPFPLQYQ
VKYSENSTTVIREADKIVSATSLLVDSILPGSSYEVQVRGKRLDGPGIWSDWSTPRVFTTQDVIYFPPKILTSVGSNVSFHCIYKKENKI
VPSKEIVWWMNLAEKIPQSQYDVVSDHVSKVTFFNLNETKPRGKFTYDAVYCCNEHECHHRYAELYVIDVNINISCETDGYLTKMTCRWS
TSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPP
SSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY
TVVMDIKVPMRGPEFWRIINGDTMKKEKNVTLLWKPLMKNDSLCSVQRYVINHHTSCNGTWSEDVGNHTKFTFLWTEQAHTVTVLAINSI
GASVANFNLTFSWPMSKVNIVQSLSAYPLNSSCVIVSWILSPSDYKLMYFIIEWKNLNEDGEIKWLRISSSVKKYYIHDHFIPIEKYQFS
P48357-3MICQKFCVVLLHWEFIYVITAFNLSYPITPWRFKLSCMPPNSTYDYFLLPAGLSKNTSNSNGHYETAVEPKFNSSGTHFSNLSKTTFHCC
FRSEQDRNCSLCADNIEGKTFVSTVNSLVFQQIDANWNIQCWLKGDLKLFICYVESLFKNLFRNYNYKVHLLYVLPEVLEDSPLVPQKGS
FQMVHCNCSVHECCECLVPVPTAKLNDTLLMCLKITSGGVIFQSPLMSVQPINMVKPDPPLGLHMEITDDGNLKISWSSPPLVPFPLQYQ
VKYSENSTTVIREADKIVSATSLLVDSILPGSSYEVQVRGKRLDGPGIWSDWSTPRVFTTQDVIYFPPKILTSVGSNVSFHCIYKKENKI
VPSKEIVWWMNLAEKIPQSQYDVVSDHVSKVTFFNLNETKPRGKFTYDAVYCCNEHECHHRYAELYVIDVNINISCETDGYLTKMTCRWS
TSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPP
SSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY
TVVMDIKVPMRGPEFWRIINGDTMKKEKNVTLLWKPLMKNDSLCSVQRYVINHHTSCNGTWSEDVGNHTKFTFLWTEQAHTVTVLAINSI
GASVANFNLTFSWPMSKVNIVQSLSAYPLNSSCVIVSWILSPSDYKLMYFIIEWKNLNEDGEIKWLRISSSVKKYYIHDHFIPIEKYQFS
LYPIFMEGVGKPKIINSFTQDDIEKHQSDAGLYVIVPVIISSSILLLGTLLISHQRMKKLFWEDVPNPKNCSWAQGLNFQKMLEGSMFVK
P48357-4MICQKFCVVLLHWEFIYVITAFNLSYPITPWRFKLSCMPPNSTYDYFLLPAGLSKNTSNSNGHYETAVEPKFNSSGTHFSNLSKTTFHCC
FRSEQDRNCSLCADNIEGKTFVSTVNSLVFQQIDANWNIQCWLKGDLKLFICYVESLFKNLFRNYNYKVHLLYVLPEVLEDSPLVPQKGS
FQMVHCNCSVHECCECLVPVPTAKLNDTLLMCLKITSGGVIFQSPLMSVQPINMVKPDPPLGLHMEITDDGNLKISWSSPPLVPFPLQYQ
VKYSENSTTVIREADKIVSATSLLVDSILPGSSYEVQVRGKRLDGPGIWSDWSTPRVFTTQDVIYFPPKILTSVGSNVSFHCIYKKENKI
VPSKEIVWWMNLAEKIPQSQYDVVSDHVSKVTFFNLNETKPRGKFTYDAVYCCNEHECHHRYAELYVIDVNINISCETDGYLTKMTCRWS
TSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPP
SSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY
TVVMDIKVPMRGPEFWRIINGDTMKKEKNVTLLWKPLMKNDSLCSVQRYVINHHTSCNGTWSEDVGNHTKFTFLWTEQAHTVTVLAINSI
GASVANFNLTFSWPMSKVNIVQSLSAYPLNSSCVIVSWILSPSDYKLMYFIIEWKNLNEDGEIKWLRISSSVKKYYIHDHFIPIEKYQFS
LYPIFMEGVGKPKIINSFTQDDIEKHQSDAGLYVIVPVIISSSILLLGTLLISHQRMKKLFWEDVPNPKNCSWAQGLNFQKKMPGTKELL
P48357-5MICQKFCVVLLHWEFIYVITAFNLSYPITPWRFKLSCMPPNSTYDYFLLPAGLSKNTSNSNGHYETAVEPKFNSSGTHFSNLSKTTFHCC
FRSEQDRNCSLCADNIEGKTFVSTVNSLVFQQIDANWNIQCWLKGDLKLFICYVESLFKNLFRNYNYKVHLLYVLPEVLEDSPLVPQKGS
FQMVHCNCSVHECCECLVPVPTAKLNDTLLMCLKITSGGVIFQSPLMSVQPINMVKPDPPLGLHMEITDDGNLKISWSSPPLVPFPLQYQ
VKYSENSTTVIREADKIVSATSLLVDSILPGSSYEVQVRGKRLDGPGIWSDWSTPRVFTTQDVIYFPPKILTSVGSNVSFHCIYKKENKI
VPSKEIVWWMNLAEKIPQSQYDVVSDHVSKVTFFNLNETKPRGKFTYDAVYCCNEHECHHRYAELYVIDVNINISCETDGYLTKMTCRWS
TSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPP
SSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY
TVVMDIKVPMRGPEFWRIINGDTMKKEKNVTLLWKPLMKNDSLCSVQRYVINHHTSCNGTWSEDVGNHTKFTFLWTEQAHTVTVLAINSI
GASVANFNLTFSWPMSKVNIVQSLSAYPLNSSCVIVSWILSPSDYKLMYFIIEWKNLNEDGEIKWLRISSSVKKYYIHDHFIPIEKYQFS

Protein Functional Features

check buttonMain function of this protein. (from UniProt)
LEPR (go to UniProt):P48357

check buttonRetention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
Accession_idSubsectionStartEndFuncitonal featureSplicing information
P48357Transmembrane840862Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Deletion;Start=840;End=1165
P48357Topological domain8631165Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Substitution;Start=892;End=896
P48357Topological domain8631165Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Deletion;Start=897;End=1165
P48357Topological domain8631165Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Substitution;Start=892;End=958
P48357Topological domain8631165Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Deletion;Start=959;End=1165
P48357Topological domain8631165Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Substitution;Start=892;End=906
P48357Topological domain8631165Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Deletion;Start=907;End=1165
P48357Topological domain8631165Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Deletion;Start=840;End=1165
P48357Region893898Note=Required for JAK2 activation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Substitution;Start=892;End=896
P48357Region893898Note=Required for JAK2 activation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Deletion;Start=897;End=1165
P48357Region893898Note=Required for JAK2 activation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Substitution;Start=892;End=958
P48357Region893898Note=Required for JAK2 activation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Substitution;Start=892;End=906
P48357Region893898Note=Required for JAK2 activation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Deletion;Start=840;End=1165
P48357Region898906Note=Required for STAT3 phosphorylation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Deletion;Start=897;End=1165
P48357Region898906Note=Required for STAT3 phosphorylation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Substitution;Start=892;End=958
P48357Region898906Note=Required for STAT3 phosphorylation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Substitution;Start=892;End=906
P48357Region898906Note=Required for STAT3 phosphorylation;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P48356Type=Deletion;Start=840;End=1165
P48357Motif871879Note=Box 1 motifType=Deletion;Start=840;End=1165


Gene Isoform Structures and Expression Levels for LEPR

check buttonGene structures of our canonical and alternative spliced genes of LEPR
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
gene isoform structure of LEPR

check button Expression levels of gene isoforms across GTEx.
gtex expression

check button Expression levels of gene isoforms across TCGA.
tcga expression


Protein Structures

check button PDB and CIF files of the predicted protein structures
* Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
3D view using mol* of P48357-1
3D view using mol* of P48357-2
3D view using mol* of P48357-3
3D view using mol* of P48357-4
3D view using mol* of P48357-5


pLDDT Score Distribution

check button pLDDT score distribution of the predicted protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
pLDDT distribution across the protein length of P48357-1
all structure
pLDDT distribution across the protein length of P48357-2
all structure
pLDDT distribution across the protein length of P48357-3
all structure
pLDDT distribution across the protein length of P48357-4
all structure
pLDDT distribution across the protein length of P48357-5
all structure


Ramachandran Plot of Protein Structures


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide.
Ramachandran plot of P48357-1
all structure
Ramachandran plot of P48357-2
all structure
Ramachandran plot of P48357-3
all structure
Ramachandran plot of P48357-5
all structure

Potential Active Site Information


check button The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite.
UniProt-idSite scoreSizeD scoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues
P48357-11.037981.131340.5990.6850.6130.760.9160.5141.7810.98738,39,40,41,42,44,78,79,80,81,82,83,85,87,113,115,
116,117,119,120,121,122,123,124,220
P48357-21.031691.023293.2650.4010.7421.0510.51.1130.4491.033119,120,123,125,127,146,148,149,150,152,153,154,15
5,156,157,188,189,190,192,217,222
P48357-31.0452661.102825.9440.5970.6880.891.1050.7711.4340.8636,37,38,39,41,79,80,81,82,85,87,90,92,96,97,98,99
,101,115,116,117,119,120,121,122,123,124,125,127,1
46,148,149,150,151,152,153,154,155,156,157,185,186
,188,189,190,192,217,218,220,222
P48357-41.0461741.08324.8210.40.7290.9790.7630.9120.8361.137119,120,123,125,127,146,148,149,150,152,153,154,15
5,156,157,158,188,189,190,192,217,222
P48357-51.0452001.102414.3440.5450.6860.8491.1370.7661.4840.66679,82,119,120,122,123,125,126,127,146,148,149,150,
151,152,153,154,155,156,157,158,185,186,187,188,18
9,190,192,217,218,220,222

Protein Structure and Feature Comparision


check button Protein Structure Comparision Using Template Modeling Scores (TM-score).
all structure

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green)
3D view using mol* of P48357-1_P48357-1_3v6o_A.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of P48357-1_3v6o_A_P48357-2.pdb
3D view using mol* of P48357-1_3v6o_A_P48357-3.pdb
3D view using mol* of P48357-1_3v6o_A_P48357-4.pdb
3D view using mol* of P48357-1_3v6o_A_P48357-5.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of P48357-1_P48357-2.pdb
3D view using mol* of P48357-1_P48357-3.pdb
3D view using mol* of P48357-1_P48357-4.pdb
3D view using mol* of P48357-1_P48357-5.pdb

check button Protein Feature Comparison of the protein sequendary structures among the protiens.
./stats/secondary_structure/figure/P48357-1_vs_P48357-2.png
all structure<
./stats/secondary_structure/figure/P48357-1_vs_P48357-3.png
all structure<
./stats/secondary_structure/figure/P48357-1_vs_P48357-4.png
all structure<
./stats/secondary_structure/figure/P48357-1_vs_P48357-5.png
all structure<

check button Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens.
./stats/relative_asa/P48357-1_vs_P48357-2.png
all structure<
./stats/relative_asa/P48357-1_vs_P48357-3.png
all structure<
./stats/relative_asa/P48357-1_vs_P48357-4.png
all structure<
./stats/relative_asa/P48357-1_vs_P48357-5.png
all structure<


Protein-Protein Interaction


check button Interactors from UniProt.
Accession_idSubsectionStartEndFuncitonal featureSplicing information


check button Interactors from STRING.
Gene nameInteractors


Related Drugs to LEPR


check button Drugs targeting this gene/protein.
(DrugBank)
UniProt accessionGene nameDrugBank IDDrug nameDrug groupActions
P48357LEPRDB09046Metreleptinapprovedagonist
P48357LEPRDB05098Leptininvestigational

Related Diseases to LEPR


check button Previous studies relating to the alternative splicing of LEPR and disease information from the MeSH term (PubMed)
GenePMIDTitleAbstractMeSH IDMeSH term


Clinically important variants in LEPR


check button (ClinVar, 04/20/2024)
accession_iduniprot_idgene_nameTypeVariantClinical_significance