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Center for Computational Systems Medicine
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Protein Summary

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AS Summary

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Protein Functional Features

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Gene Isoform Structures and Expression Levels

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Protein Structures

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pLDDT Score Distribution

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Ramachandran Plot of Protein Structures

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Potential Active Site Information

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Protein Structure and Feature Comparision

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Protein-Protein Interaction

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Related Drugs

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Related Diseases

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Clinically Important Variants

Protein:PDE4D

Protein Summary

check button Gene summary
Gene name: PDE4D
ASpdb.0 ID: 5144
Gene
Gene symbol

PDE4D

Gene ID

5144

Gene namephosphodiesterase 4D
SynonymsACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1
Cytomap

5q11.2-q12.1

Type of geneprotein-coding
Description3',5'-cyclic-AMP phosphodiesterase 4DcAMP-specific 3',5'-cyclic phosphodiesterase 4DcAMP-specific phosphodiesterase PDE4D6phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila)testicular tissue protein Li 136
Modification date20240416
UniProtAcc

Q08499


check button Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
GenePDE4D

GO:0004115

3',5'-cyclic-AMP phosphodiesterase activity

9371713|17404263|20819076

GenePDE4D

GO:0005829

cytosol

-

GenePDE4D

GO:0005886

plasma membrane

-

GenePDE4D

GO:0030552

cAMP binding

9371713|15938621|20819076

GenePDE4D

GO:0034704

calcium channel complex

16213210

GenePDE4D

GO:0106072

negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway

20819076



AS Summary

check button Information of the canonical protein with experimentally identified structure from PDB (2023).
UniProt AccFile namePDB IDMethodResolutionChainStartEnd
Q08499-1Q08499-1_3g58_D.pdb3G58X-ray2.05D381739

check button ASpdb's canonical and alternatively spliced isoform information.
accession_idgene_namecanonical_idalternative_idcanonical_lengthalternative_lengthcanonical_startcanonical_endtypeoriginalSEQvariationSEQalternative_startalternative_end
Q08499PDE4DQ08499-1Q08499-108096791130Deletionnonenone00
Q08499PDE4DQ08499-1Q08499-10809679131152SubstitutionGHRPGLKKSRMSWPSSFQGLRRMSIIMKPRSRSTSSLRTAEAVC122
Q08499PDE4DQ08499-1Q08499-11809748161Deletionnonenone00
Q08499PDE4DQ08499-1Q08499-1180974862152SubstitutionPPSPQPQPQCPLQPPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTERYLYCRAMDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRMKRNTCDLLSRSKSASEETLHSSNEEEDPFRGMEPYLVRRLSCRNIQLPPLAFRQLEQADLKSESENIQRPTSLPLKILPLIAITSAESSG191
Q08499PDE4DQ08499-1Q08499-128092191152SubstitutionMEAEGSSAPARAGSGEGSDSAGGATLKAPKHLWRHEQHHQYPLRQPQFRLLHPHHHLPPPPPPSPQPQPQCPLQPPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTERYLYCRAMDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRMAQQTSPDTLTVPEVDNPHCPNPWLNEDLVKSLRENLLQHEKSKTARKSVSPKLSPVISPRNSPRLLRRMLLSSNIPKQRRFTVAHTC188
Q08499PDE4DQ08499-1Q08499-12809219270283SubstitutionEEAYQKLASETLEEGSWMELNPYTLLDM206219
Q08499PDE4DQ08499-1Q08499-12809219284809Deletionnonenone219219
Q08499PDE4DQ08499-1Q08499-28096731152SubstitutionMEAEGSSAPARAGSGEGSDSAGGATLKAPKHLWRHEQHHQYPLRQPQFRLLHPHHHLPPPPPPSPQPQPQCPLQPPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTERYLYCRAMDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRMMHVNNFPFRRHSWIC116
Q08499PDE4DQ08499-1Q08499-38096041205Deletionnonenone00
Q08499PDE4DQ08499-1Q08499-48095841269SubstitutionMEAEGSSAPARAGSGEGSDSAGGATLKAPKHLWRHEQHHQYPLRQPQFRLLHPHHHLPPPPPPSPQPQPQCPLQPPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTERYLYCRAMDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRFDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITMKEQPSCAGTGHPMAGYGRMAPFELASGPVKRLRTESPFPCLFA144
Q08499PDE4DQ08499-1Q08499-58095071302Deletionnonenone00
Q08499PDE4DQ08499-1Q08499-68097451152SubstitutionMEAEGSSAPARAGSGEGSDSAGGATLKAPKHLWRHEQHHQYPLRQPQFRLLHPHHHLPPPPPPSPQPQPQCPLQPPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTERYLYCRAMDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRMAQQTSPDTLTVPEVDNPHCPNPWLNEDLVKSLRENLLQHEKSKTARKSVSPKLSPVISPRNSPRLLRRMLLSSNIPKQRRFTVAHTC188
Q08499PDE4DQ08499-1Q08499-78092151152SubstitutionMEAEGSSAPARAGSGEGSDSAGGATLKAPKHLWRHEQHHQYPLRQPQFRLLHPHHHLPPPPPPSPQPQPQCPLQPPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTERYLYCRAMDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRMAQQTSPDTLTVPEVDNPHCPNPWLNEDLVKSLRENLLQHEKSKTARKSVSPKLSPVISPRNSPRLLRRMLLSSNIPKQRRFTVAHTC188
Q08499PDE4DQ08499-1Q08499-7809215270279SubstitutionEEAYQKLASEGLYNGIIAFL206215
Q08499PDE4DQ08499-1Q08499-7809215280809Deletionnonenone215215
Q08499PDE4DQ08499-1Q08499-88095181291Deletionnonenone00
Q08499PDE4DQ08499-1Q08499-8809518292306SubstitutionETLQTRHSVSEMASNMPEANYLLSVSWGYI115
Q08499PDE4DQ08499-1Q08499-98096871122Deletionnonenone00
Q08499PDE4DQ08499-1Q08499-9809687123152SubstitutionRTSYAVETGHRPGLKKSRMSWPSSFQGLRRMAFVWDPLGATVPGPSTRAKSRLRFSKSYS130

check buttonMultiple sequence alignment of our canonical and alternatively spliced PDE4D

check button Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of PDE4D
UniProt-idENSGENSTENSP
Q08499-1ENSG00000113448.21ENST00000340635.11ENSP00000345502.6
Q08499-10ENSG00000113448.21ENST00000503258.5ENSP00000425605.1
Q08499-11ENSG00000113448.21ENST00000502484.6ENSP00000423094.2
Q08499-12ENSG00000113448.21ENST00000502575.1ENSP00000425917.1
Q08499-2ENSG00000113448.21ENST00000360047.9ENSP00000353152.5
Q08499-5ENSG00000113448.21ENST00000358923.10ENSP00000351800.6
Q08499-6ENSG00000113448.21ENST00000507116.6ENSP00000424852.1
Q08499-7ENSG00000113448.21ENST00000309641.10ENSP00000308485.6
Q08499-8ENSG00000113448.21ENST00000317118.12ENSP00000321739.8
Q08499-9ENSG00000113448.21ENST00000405755.6ENSP00000384806.2

UniProt-idNM IDNP ID
Q08499-1NM_001104631.1NP_001098101.1
Q08499-10NM_001197220.1NP_001184149.1
Q08499-11NM_001165899.1NP_001159371.1
Q08499-11XM_011543473.1XP_011541775.1
Q08499-11XM_017009566.1XP_016865055.1
Q08499-2NM_006203.4NP_006194.2
Q08499-5NM_001197221.1NP_001184150.1
Q08499-6NM_001197218.1NP_001184147.1
Q08499-8NM_001197223.1NP_001184152.1
Q08499-9NM_001197219.1NP_001184148.1

check buttonAmino acid sequences of our canonical and alternatively spliced PDE4D
accession_idProtein sequence
Q08499-1MEAEGSSAPARAGSGEGSDSAGGATLKAPKHLWRHEQHHQYPLRQPQFRLLHPHHHLPPPPPPSPQPQPQCPLQPPPPPPLPPPPPPPGA
ARGRYASSGATGRVRHRGYSDTERYLYCRAMDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRFDVDNGTSAGRSPLDPMTSPGSGLILQA
NFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITE
EAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRP
MSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMT
LEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGF
KLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQL
YRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAP
Q08499-10MSIIMKPRSRSTSSLRTAEAVCFDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDD
LIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKR
MLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELED
VNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL
EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMN
LLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKS
QVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGESDTEKDSGSQVEEDT
Q08499-11MKRNTCDLLSRSKSASEETLHSSNEEEDPFRGMEPYLVRRLSCRNIQLPPLAFRQLEQADLKSESENIQRPTSLPLKILPLIAITSAESS
GFDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFA
ALTNLQDRAPSKRSPMCNQPSINKATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSE
FISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLT
VIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSN
QFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLL
LDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVH
PDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGESDTEKDSGSQVEEDTSCSDSKTLCTQDSESTEIPLD
Q08499-12MAQQTSPDTLTVPEVDNPHCPNPWLNEDLVKSLRENLLQHEKSKTARKSVSPKLSPVISPRNSPRLLRRMLLSSNIPKQRRFTVAHTCFD
VDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALT
Q08499-2MMHVNNFPFRRHSWICFDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPF
AQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNREL
THLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGL
HVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI
FASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK
TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFID
YIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGESDTEKDSGSQVEEDTSCSDSK
Q08499-3MSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITEEAYQKLASETLEELDWCLDQLETLQ
TRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFG
VKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTH
VLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKM
VIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGME
ISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGE
Q08499-4MKEQPSCAGTGHPMAGYGRMAPFELASGPVKRLRTESPFPCLFAEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRE
LTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWG
LHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAA
IFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADL
KTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFI
DYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGESDTEKDSGSQVEEDTSCSDS
Q08499-5MASNKFKRMLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQED
VLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPA
LEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLA
TDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDK
HNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGESDTEKDS
Q08499-6MAQQTSPDTLTVPEVDNPHCPNPWLNEDLVKSLRENLLQHEKSKTARKSVSPKLSPVISPRNSPRLLRRMLLSSNIPKQRRFTVAHTCFD
VDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALT
NLQDRAPSKRSPMCNQPSINKATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEFIS
NTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIM
HTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFL
INTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDN
YSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDA
QDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGESDTEKDSGSQVEEDTSCSDSKTLCTQDSESTEIPLDEQV
Q08499-7MAQQTSPDTLTVPEVDNPHCPNPWLNEDLVKSLRENLLQHEKSKTARKSVSPKLSPVISPRNSPRLLRRMLLSSNIPKQRRFTVAHTCFD
VDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALT
Q08499-8MPEANYLLSVSWGYIKFKRMLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSI
PRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVV
QSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQS
LRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERE
RGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLE
Q08499-9MAFVWDPLGATVPGPSTRAKSRLRFSKSYSFDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSI
ASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSE
MASNKFKRMLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQED
VLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPA
LEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLA
TDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDK
HNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGESDTEKDS

Protein Functional Features

check buttonMain function of this protein. (from UniProt)
PDE4D (go to UniProt):Q08499

check buttonRetention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
Accession_idSubsectionStartEndFuncitonal featureSplicing information
Q08499Domain386715Note=PDEase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01192Type=Deletion;Start=284;End=809
Q08499Domain386715Note=PDEase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01192Type=Deletion;Start=280;End=809
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=130
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=61
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=62;End=152
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=152
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=152
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=205
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=269
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=302
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=152
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=152
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=291
Q08499Region1107Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=122
Q08499Region343364Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=284;End=809
Q08499Region343364Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=280;End=809
Q08499Region710729Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=284;End=809
Q08499Region710729Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=280;End=809
Q08499Region739809Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=284;End=809
Q08499Region739809Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=280;End=809
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=130
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=61
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=62;End=152
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=152
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=152
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=205
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=269
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=302
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=152
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=1;End=152
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=291
Q08499Compositional bias5391Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=122
Q08499Compositional bias345362Note=Basic and acidic residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=284;End=809
Q08499Compositional bias345362Note=Basic and acidic residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=280;End=809
Q08499Compositional bias758777Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=284;End=809
Q08499Compositional bias758777Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=280;End=809
Q08499Compositional bias778798Note=Acidic residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=284;End=809
Q08499Compositional bias778798Note=Acidic residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=280;End=809


Gene Isoform Structures and Expression Levels for PDE4D

check buttonGene structures of our canonical and alternative spliced genes of PDE4D
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
gene isoform structure of PDE4D

check button Expression levels of gene isoforms across GTEx.
gtex expression

check button Expression levels of gene isoforms across TCGA.
tcga expression


Protein Structures

check button PDB and CIF files of the predicted protein structures
* Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
3D view using mol* of Q08499-1
3D view using mol* of Q08499-10
3D view using mol* of Q08499-11
3D view using mol* of Q08499-12
3D view using mol* of Q08499-2
3D view using mol* of Q08499-3
3D view using mol* of Q08499-4
3D view using mol* of Q08499-5
3D view using mol* of Q08499-6
3D view using mol* of Q08499-7
3D view using mol* of Q08499-8
3D view using mol* of Q08499-9


pLDDT Score Distribution

check button pLDDT score distribution of the predicted protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
pLDDT distribution across the protein length of Q08499-1
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pLDDT distribution across the protein length of Q08499-10
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pLDDT distribution across the protein length of Q08499-11
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pLDDT distribution across the protein length of Q08499-12
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pLDDT distribution across the protein length of Q08499-2
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pLDDT distribution across the protein length of Q08499-3
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pLDDT distribution across the protein length of Q08499-4
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pLDDT distribution across the protein length of Q08499-5
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pLDDT distribution across the protein length of Q08499-6
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pLDDT distribution across the protein length of Q08499-7
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pLDDT distribution across the protein length of Q08499-8
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pLDDT distribution across the protein length of Q08499-9
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Ramachandran Plot of Protein Structures


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide.
Ramachandran plot of Q08499-1
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Ramachandran plot of Q08499-10
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Ramachandran plot of Q08499-11
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Ramachandran plot of Q08499-12
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Ramachandran plot of Q08499-3
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Ramachandran plot of Q08499-6
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Ramachandran plot of Q08499-8
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Potential Active Site Information


check button The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite.
UniProt-idSite scoreSizeD scoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues
Q08499-11.052081.022667.1350.5090.7731.0070.5271.170.450.9461,462,466,502,503,506,508,509,510,511,512,513,51
5,516,527,528,529,530,531,532,535,573,574,575,576,
620,621,623,624,631,634,635,638,639,641,642,645,64
9,654,655,657,658,659,660,670,671,674,678
Q08499-101.0392551.066903.1190.590.7330.9050.5820.9620.6050.8111,2,3,4,5,331,332,336,372,373,376,378,379,380,381,
382,383,385,386,397,398,399,400,401,402,405,443,44
4,445,446,448,449,450,490,491,493,494,501,504,505,
508,509,511,512,515,519,524,525,526,527,528,529,53
0,540,541,543,544,547,548,608
Q08499-111.0561311.146301.1540.6080.640.8341.2010.5452.2030.847281,282,283,284,285,286,287,288,479,482,483,490,49
5,496,498,499,500,501,502,503,506,507,544
Q08499-120.584310.48954.5370.6740.5610.8130.3471.1390.3040.591178,179,180,181,199,200,201,202,203
Q08499-21.0464071.0041016.3090.5020.7660.9410.5331.2140.4390.799173,188,191,192,193,195,196,197,199,200,201,202,20
3,204,205,206,325,326,330,366,367,370,373,374,375,
376,377,379,380,391,392,393,394,395,396,399,432,43
5,436,437,438,439,440,441,443,444,445,448,477,484,
485,487,488,495,498,499,502,503,505,506,509,513,51
8,519,520,521,522,523,524,525,528,529,534,535,538,
598
Q08499-31.033311.0261225.1960.5360.7440.9640.6981.1060.6310.955256,257,297,298,301,303,304,305,306,307,308,310,31
1,322,323,324,325,326,327,330,368,369,370,371,372,
374,375,415,416,418,419,426,429,430,433,436,437,44
0,444,449,450,451,452,453,454,455,456,459,460,461,
465,466,468,469,472,473,531,532,533,534,535,536,53
7,538
Q08499-41.0353061.0551108.5760.5530.7430.9380.8531.0140.840.908236,237,277,278,281,284,285,286,287,290,302,303,30
4,305,306,307,310,348,349,350,351,352,353,354,395,
396,397,398,399,406,409,410,413,416,417,420,431,43
2,433,434,435,436,439,440,441,444,445,446,448,449,
452,453,510,511,512,513,514,515,516
Q08499-51.0754161.007834.8620.3940.811.0650.5651.2830.440.93722,25,26,27,29,30,33,34,35,36,37,38,39,40,41,159,1
60,164,200,201,204,206,207,208,209,210,211,213,214
,225,226,227,228,229,230,233,271,272,273,274,275,3
18,319,321,322,329,332,333,336,339,340,343,347,352
,353,354,355,356,357,358,359,362,363,368,369,372
Q08499-61.0661571.048429.0930.4710.7971.0210.8091.1360.7121.378397,398,402,438,439,442,445,446,447,448,467,468,47
1,509,510,511,556,557,559,560,567,570,571,574,575,
577,578,581,595,606,607,609,610
Q08499-70.81640.844102.2140.7020.5370.7590.670.7060.9490.955150,151,152,153,154,155,158,163,164,166,167,170,17
1,174
Q08499-81.0534021.013851.6690.4550.7780.990.621.2060.5140.92633,36,37,38,40,41,42,44,45,46,47,48,49,50,51,52,53
,170,171,175,211,212,215,218,219,220,221,222,224,2
25,236,237,238,239,240,241,244,282,283,284,285,286
,329,330,332,333,340,343,344,347,348,350,351,354,3
58,363,364,365,366,367,368,369,370,373,374,379,380
,383
Q08499-91.0611141.117246.6170.6190.7080.9291.4680.761.9320.6311,2,3,4,5,339,501,502,509,512,513,516,517,520,534,
535,536,537,538,539,542,543,548,549,551,552,555,55
6

Protein Structure and Feature Comparision


check button Protein Structure Comparision Using Template Modeling Scores (TM-score).
all structure

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green)
3D view using mol* of Q08499-1_Q08499-1_3g58_D.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q08499-1_3g58_D_Q08499-10.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-11.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-12.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-2.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-3.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-4.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-5.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-6.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-7.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-8.pdb
3D view using mol* of Q08499-1_3g58_D_Q08499-9.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q08499-1_Q08499-10.pdb
3D view using mol* of Q08499-1_Q08499-11.pdb
3D view using mol* of Q08499-1_Q08499-12.pdb
3D view using mol* of Q08499-1_Q08499-2.pdb
3D view using mol* of Q08499-1_Q08499-3.pdb
3D view using mol* of Q08499-1_Q08499-4.pdb
3D view using mol* of Q08499-1_Q08499-5.pdb
3D view using mol* of Q08499-1_Q08499-6.pdb
3D view using mol* of Q08499-1_Q08499-7.pdb
3D view using mol* of Q08499-1_Q08499-8.pdb
3D view using mol* of Q08499-1_Q08499-9.pdb

check button Protein Feature Comparison of the protein sequendary structures among the protiens.
./stats/secondary_structure/figure/Q08499-1_vs_Q08499-10.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-11.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-12.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-2.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-3.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-4.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-5.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-6.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-7.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-8.png
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./stats/secondary_structure/figure/Q08499-1_vs_Q08499-9.png
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check button Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens.
./stats/relative_asa/Q08499-1_vs_Q08499-10.png
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./stats/relative_asa/Q08499-1_vs_Q08499-11.png
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./stats/relative_asa/Q08499-1_vs_Q08499-12.png
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./stats/relative_asa/Q08499-1_vs_Q08499-2.png
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./stats/relative_asa/Q08499-1_vs_Q08499-3.png
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./stats/relative_asa/Q08499-1_vs_Q08499-4.png
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./stats/relative_asa/Q08499-1_vs_Q08499-5.png
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./stats/relative_asa/Q08499-1_vs_Q08499-6.png
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./stats/relative_asa/Q08499-1_vs_Q08499-7.png
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./stats/relative_asa/Q08499-1_vs_Q08499-8.png
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./stats/relative_asa/Q08499-1_vs_Q08499-9.png
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Protein-Protein Interaction


check button Interactors from UniProt.
Accession_idSubsectionStartEndFuncitonal featureSplicing information


check button Interactors from STRING.
Gene nameInteractors


Related Drugs to PDE4D


check button Drugs targeting this gene/protein.
(DrugBank)
UniProt accessionGene nameDrugBank IDDrug nameDrug groupActions
Q08499PDE4DDB02918Zardaverineexperimental
Q08499PDE4DDB01088Iloprostapproved, investigationalinducer
Q08499PDE4DDB042713,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl Esterexperimental
Q08499PDE4DDB00131Adenosine phosphateapproved, investigational, nutraceutical, withdrawnproduct of
Q08499PDE4DDB079543-isobutyl-1-methyl-7H-xanthineexperimental
Q08499PDE4DDB070513,5-DIMETHYL-1-PHENYL-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTERexperimental
Q08499PDE4DDB06842(4R)-4-(3-butoxy-4-methoxybenzyl)imidazolidin-2-oneexperimental
Q08499PDE4DDB04149(R)-Rolipramexperimental
Q08499PDE4DDB01791Piclamilastexperimental
Q08499PDE4DDB05298Tetomilastinvestigational
Q08499PDE4DDB05266Ibudilastinvestigationalinhibitor
Q08499PDE4DDB044691-(4-Methoxyphenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl Esterexperimental
Q08499PDE4DDB082994-[8-(3-nitrophenyl)-1,7-naphthyridin-6-yl]benzoic acidexperimental
Q08499PDE4DDB03849Cilomilastinvestigationalinhibitor
Q08499PDE4DDB05219Crisaboroleapproved, investigationalinhibitor
Q08499PDE4DDB019593,5-Dimethyl-1-(3-Nitrophenyl)-1h-Pyrazole-4-Carboxylic Acid Ethyl Esterexperimental
Q08499PDE4DDB00651Dyphyllineapprovedinhibitor
Q08499PDE4DDB03606(S)-Rolipramexperimental
Q08499PDE4DDB031831-(4-Aminophenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl Esterexperimental
Q08499PDE4DDB026762-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diolexperimental
Q08499PDE4DDB01954Rolipraminvestigational
Q08499PDE4DDB06246Exisulindinvestigational

Related Diseases to PDE4D


check button Previous studies relating to the alternative splicing of PDE4D and disease information from the MeSH term (PubMed)
GenePMIDTitleAbstractMeSH IDMeSH term


Clinically important variants in PDE4D


check button (ClinVar, 04/20/2024)
accession_iduniprot_idgene_nameTypeVariantClinical_significance