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Center for Computational Systems Medicine
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Protein Summary

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AS Summary

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Protein Functional Features

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Gene Isoform Structures and Expression Levels

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Protein Structures

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pLDDT Score Distribution

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Ramachandran Plot of Protein Structures

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Potential Active Site Information

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Protein Structure and Feature Comparision

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Protein-Protein Interaction

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Related Drugs

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Related Diseases

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Clinically Important Variants

Protein:TFDP2

Protein Summary

check button Gene summary
Gene name: TFDP2
ASpdb.0 ID: 7029
Gene
Gene symbol

TFDP2

Gene ID

7029

Gene nametranscription factor Dp-2
SynonymsDP2
Cytomap

3q23

Type of geneprotein-coding
Descriptiontranscription factor Dp-2transcription factor Dp-2 (E2F dimerization partner 2)
Modification date20240305
UniProtAcc

Q14188


check button Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
GeneTFDP2

GO:0000977

RNA polymerase II transcription regulatory region sequence-specific DNA binding

7739537|9501179

GeneTFDP2

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

7739537

GeneTFDP2

GO:0005654

nucleoplasm

-

GeneTFDP2

GO:0045892

negative regulation of DNA-templated transcription

20176812

GeneTFDP2

GO:0045944

positive regulation of transcription by RNA polymerase II

7739537

GeneTFDP2

GO:0072686

mitotic spindle

-

GeneTFDP2

GO:0090575

RNA polymerase II transcription regulator complex

7739537|9501179



AS Summary

check button Information of the canonical protein with experimentally identified structure from PDB (2023).
UniProt AccFile namePDB IDMethodResolutionChainStartEnd
Q14188-1Q14188-1_1cf7_B.pdb1CF7X-ray2.6B129210

check button ASpdb's canonical and alternatively spliced isoform information.
accession_idgene_namecanonical_idalternative_idcanonical_lengthalternative_lengthcanonical_startcanonical_endtypeoriginalSEQvariationSEQalternative_startalternative_end
Q14188TFDP2Q14188-1Q14188-2446369161Deletionnonenone00
Q14188TFDP2Q14188-1Q14188-2446369103118Deletionnonenone4141
Q14188TFDP2Q14188-1Q14188-3446370161Deletionnonenone00
Q14188TFDP2Q14188-1Q14188-3446370103118Deletionnonenone4141
Q14188TFDP2Q14188-1Q14188-3446370173173SubstitutionSSQ9697
Q14188TFDP2Q14188-1Q14188-4446385161Deletionnonenone00
Q14188TFDP2Q14188-1Q14188-5446386161Deletionnonenone00
Q14188TFDP2Q14188-1Q14188-5446386173173SubstitutionSSQ112113
Q14188TFDP2Q14188-1Q14188-644634916SubstitutionMTAKNVMLDPKC16
Q14188TFDP2Q14188-1Q14188-64463497103Deletionnonenone66
Q14188TFDP2Q14188-1Q14188-74463101136Deletionnonenone00
Q14188TFDP2Q14188-1Q14188-8446418162SubstitutionMTAKNVGLTSTNAEVRGFIDQNLSPTKGNISFVAFPVSNTNSPTKILPKTLGPINVNVGPQMMQPEGIIFEAENKPSPGTESAGTFILDLSATSRT134

check buttonMultiple sequence alignment of our canonical and alternatively spliced TFDP2

check button Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of TFDP2
UniProt-idENSGENSTENSP
Q14188-1ENSG00000114126.18ENST00000489671.6ENSP00000420616.1
Q14188-4ENSG00000114126.18ENST00000479040.5ENSP00000417585.1
Q14188-5ENSG00000114126.18ENST00000467072.5ENSP00000418590.1
Q14188-5ENSG00000114126.18ENST00000486111.5ENSP00000420599.1
Q14188-6ENSG00000114126.18ENST00000495310.5ENSP00000419036.1
Q14188-7ENSG00000114126.18ENST00000477292.5ENSP00000418971.1
Q14188-8ENSG00000114126.18ENST00000499676.5ENSP00000439782.2

UniProt-idNM IDNP ID
Q14188-1NM_001178139.1NP_001171610.1
Q14188-1XM_017007091.1XP_016862580.1
Q14188-5NM_001178138.1NP_001171609.1
Q14188-5NM_006286.4NP_006277.1
Q14188-6NM_001178141.1NP_001171612.1
Q14188-7NM_001178142.1NP_001171613.1
Q14188-8NM_001178140.1NP_001171611.1

check buttonAmino acid sequences of our canonical and alternatively spliced TFDP2
accession_idProtein sequence
Q14188-1MTAKNVGLTSTNAEVRGFIDQNLSPTKGNISFVAFPVSNTNSPTKILPKTLGPINVNVGPQMIISTPQRLTSSGSVLIGSPYTPAPAMVT
QTHIAEATGWVPGDRKRARKFIDSDFSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNI
RRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNS
TIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWLN
Q14188-2MIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATGWVPSKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNN
HLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQ
NEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEG
YITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHCSESRGETPCSFNDEDEED
Q14188-3MIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATGWVPSKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNN
HLAADSQAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNR
QNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALE
GYITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHCSESRGETPCSFNDEDEE
Q14188-4MIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSY
NEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQEL
LLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSL
EDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHCSE
Q14188-5MIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSY
NEVADELVSEFTNSNNHLAADSQAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQE
LLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCS
LEDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHCS
Q14188-6MLDPKCDRKRARKFIDSDFSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDA
LNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFI
IINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNS
Q14188-7MKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQR
RIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLK
RMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLA
Q14188-8MQPEGIIFEAENKPSPGTESAGTFILDLSATSRTIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSE
SKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIG
LPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEY
LFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVN

Protein Functional Features

check buttonMain function of this protein. (from UniProt)
TFDP2 (go to UniProt):Q14188

check buttonRetention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
Accession_idSubsectionStartEndFuncitonal featureSplicing information
Q14188DNA binding129210Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Substitution;Start=173;End=173
Q14188DNA binding129210Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Substitution;Start=173;End=173
Q14188DNA binding129210Ontology_term=ECO:0000255;evidence=ECO:0000255Type=Deletion;Start=1;End=136
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=61
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=61
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=61
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=61
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=7;End=103
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=136
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Substitution;Start=1;End=62
Q14188Motif103118Note=Nuclear localization signal;Ontology_term=ECO:0000250;evidence=ECO:0000250Type=Deletion;Start=103;End=118
Q14188Motif103118Note=Nuclear localization signal;Ontology_term=ECO:0000250;evidence=ECO:0000250Type=Deletion;Start=103;End=118
Q14188Motif103118Note=Nuclear localization signal;Ontology_term=ECO:0000250;evidence=ECO:0000250Type=Deletion;Start=7;End=103
Q14188Motif103118Note=Nuclear localization signal;Ontology_term=ECO:0000250;evidence=ECO:0000250Type=Deletion;Start=1;End=136


Gene Isoform Structures and Expression Levels for TFDP2

check buttonGene structures of our canonical and alternative spliced genes of TFDP2
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
gene isoform structure of TFDP2

check button Expression levels of gene isoforms across GTEx.
gtex expression

check button Expression levels of gene isoforms across TCGA.
tcga expression


Protein Structures

check button PDB and CIF files of the predicted protein structures
* Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
3D view using mol* of Q14188-1
3D view using mol* of Q14188-2
3D view using mol* of Q14188-3
3D view using mol* of Q14188-4
3D view using mol* of Q14188-5
3D view using mol* of Q14188-6
3D view using mol* of Q14188-7
3D view using mol* of Q14188-8


pLDDT Score Distribution

check button pLDDT score distribution of the predicted protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
pLDDT distribution across the protein length of Q14188-1
all structure
pLDDT distribution across the protein length of Q14188-2
all structure
pLDDT distribution across the protein length of Q14188-3
all structure
pLDDT distribution across the protein length of Q14188-4
all structure
pLDDT distribution across the protein length of Q14188-5
all structure
pLDDT distribution across the protein length of Q14188-6
all structure
pLDDT distribution across the protein length of Q14188-7
all structure
pLDDT distribution across the protein length of Q14188-8
all structure


Ramachandran Plot of Protein Structures


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide.
Ramachandran plot of Q14188-1
all structure
Ramachandran plot of Q14188-2
all structure
Ramachandran plot of Q14188-3
all structure
Ramachandran plot of Q14188-4
all structure
Ramachandran plot of Q14188-7
all structure
Ramachandran plot of Q14188-8
all structure

Potential Active Site Information


check button The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite.
UniProt-idSite scoreSizeD scoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues
Q14188-11.0451031.091311.4440.4580.7070.991.1440.8361.3670.624228,231,232,233,235,236,238,239,242,324,325,348,35
1,352,355,356,358,359,362,363
Q14188-21.017961.083220.5490.6550.6420.7940.9790.6841.431.315155,158,159,161,162,163,166,247,248,250,270,271,27
4,275,278,279,280,281,282,285
Q14188-31.0031121.049328.2510.5960.6530.8580.6140.8680.7071.121148,152,155,156,159,160,162,163,167,248,249,272,27
5,276,279,280,281,282,283,286,287,289,290
Q14188-40.963761.007174.930.650.6750.8521.0860.6661.6321.997171,174,175,177,178,182,264,286,287,290,291,294,29
5,297,298
Q14188-50.9971251.032331.6810.5640.6630.8980.630.9390.6711.253168,171,172,175,176,178,179,182,183,264,265,267,28
8,291,292,295,296,298,299,302,303
Q14188-60.886620.863241.1290.5040.7491.0780.5451.0010.5440.788131,134,135,138,139,142,251,254,259,261,262,265,26
6
Q14188-70.883660.896231.8680.6560.6640.9010.9870.8151.2111.03292,95,96,99,100,103,107,188,189,191,215,216,219,22
0,222,223,226,227
Q14188-81.0341361.081315.9030.4870.6920.9391.0530.8411.2521.03926,27,28,30,32,33,34,35,36,37,38,39,249,251,267,26
8,269,270,271,272,273,274,278,280

Protein Structure and Feature Comparision


check button Protein Structure Comparision Using Template Modeling Scores (TM-score).
all structure

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green)
3D view using mol* of Q14188-1_Q14188-1_1cf7_B.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q14188-1_1cf7_B_Q14188-2.pdb
3D view using mol* of Q14188-1_1cf7_B_Q14188-3.pdb
3D view using mol* of Q14188-1_1cf7_B_Q14188-4.pdb
3D view using mol* of Q14188-1_1cf7_B_Q14188-5.pdb
3D view using mol* of Q14188-1_1cf7_B_Q14188-6.pdb
3D view using mol* of Q14188-1_1cf7_B_Q14188-7.pdb
3D view using mol* of Q14188-1_1cf7_B_Q14188-8.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q14188-1_Q14188-2.pdb
3D view using mol* of Q14188-1_Q14188-3.pdb
3D view using mol* of Q14188-1_Q14188-4.pdb
3D view using mol* of Q14188-1_Q14188-5.pdb
3D view using mol* of Q14188-1_Q14188-6.pdb
3D view using mol* of Q14188-1_Q14188-7.pdb
3D view using mol* of Q14188-1_Q14188-8.pdb

check button Protein Feature Comparison of the protein sequendary structures among the protiens.
./stats/secondary_structure/figure/Q14188-1_vs_Q14188-2.png
all structure<
./stats/secondary_structure/figure/Q14188-1_vs_Q14188-3.png
all structure<
./stats/secondary_structure/figure/Q14188-1_vs_Q14188-4.png
all structure<
./stats/secondary_structure/figure/Q14188-1_vs_Q14188-5.png
all structure<
./stats/secondary_structure/figure/Q14188-1_vs_Q14188-6.png
all structure<
./stats/secondary_structure/figure/Q14188-1_vs_Q14188-7.png
all structure<
./stats/secondary_structure/figure/Q14188-1_vs_Q14188-8.png
all structure<

check button Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens.
./stats/relative_asa/Q14188-1_vs_Q14188-2.png
all structure<
./stats/relative_asa/Q14188-1_vs_Q14188-3.png
all structure<
./stats/relative_asa/Q14188-1_vs_Q14188-4.png
all structure<
./stats/relative_asa/Q14188-1_vs_Q14188-5.png
all structure<
./stats/relative_asa/Q14188-1_vs_Q14188-6.png
all structure<
./stats/relative_asa/Q14188-1_vs_Q14188-7.png
all structure<
./stats/relative_asa/Q14188-1_vs_Q14188-8.png
all structure<


Protein-Protein Interaction


check button Interactors from UniProt.
Accession_idSubsectionStartEndFuncitonal featureSplicing information
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=61
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=61
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=61
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=61
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=7;End=103
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Deletion;Start=1;End=136
Q14188Region6082Note=Interaction with CEBPA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20176812;Dbxref=PMID:20176812Type=Substitution;Start=1;End=62


check button Interactors from STRING.
Gene nameInteractors


Related Drugs to TFDP2


check button Drugs targeting this gene/protein.
(DrugBank)
UniProt accessionGene nameDrugBank IDDrug nameDrug groupActions

Related Diseases to TFDP2


check button Previous studies relating to the alternative splicing of TFDP2 and disease information from the MeSH term (PubMed)
GenePMIDTitleAbstractMeSH IDMeSH term


Clinically important variants in TFDP2


check button (ClinVar, 04/20/2024)
accession_iduniprot_idgene_nameTypeVariantClinical_significance