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Center for Computational Systems Medicine
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Protein Summary

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AS Summary

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Protein Functional Features

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Gene Isoform Structures and Expression Levels

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Protein Structures

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pLDDT Score Distribution

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Ramachandran Plot of Protein Structures

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Potential Active Site Information

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Protein Structure and Feature Comparision

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Protein-Protein Interaction

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Related Drugs

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Related Diseases

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Clinically Important Variants

Protein:FBXO11

Protein Summary

check button Gene summary
Gene name: FBXO11
ASpdb.0 ID: 80204
Gene
Gene symbol

FBXO11

Gene ID

80204

Gene nameF-box protein 11
SynonymsFBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1
Cytomap

2p16.3

Type of geneprotein-coding
DescriptionF-box only protein 11protein arginine N-methyltransferase 9ubiquitin protein ligase E3 component n-recognin 6vitiligo-associated protein 1vitiligo-associated protein VIT-1
Modification date20240403
UniProtAcc

Q86XK2


check button Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
GeneFBXO11

GO:0005634

nucleus

16487488

GeneFBXO11

GO:0005654

nucleoplasm

-

GeneFBXO11

GO:0005730

nucleolus

-

GeneFBXO11

GO:0005737

cytoplasm

16487488

GeneFBXO11

GO:0016274

protein-arginine N-methyltransferase activity

16487488

GeneFBXO11

GO:0036211

protein modification process

16487488



AS Summary

check button Information of the canonical protein with experimentally identified structure from PDB (2023).
UniProt AccFile namePDB IDMethodResolutionChainStartEnd
Q86XK2-1Q86XK2-1_5vmd_A.pdb5VMDX-ray2.2A834902

check button ASpdb's canonical and alternatively spliced isoform information.
accession_idgene_namecanonical_idalternative_idcanonical_lengthalternative_lengthcanonical_startcanonical_endtypeoriginalSEQvariationSEQalternative_startalternative_end
Q86XK2FBXO11Q86XK2-1Q86XK2-29275611209Deletionnonenone00
Q86XK2FBXO11Q86XK2-1Q86XK2-2927561744770SubstitutionLLEENDIFRNAQAGVLISTNSHPILRKIVVNFALVKNPVFHYSSISLMINDIAN535561
Q86XK2FBXO11Q86XK2-1Q86XK2-2927561771927Deletionnonenone561561
Q86XK2FBXO11Q86XK2-1Q86XK2-3927585184Deletionnonenone00
Q86XK2FBXO11Q86XK2-1Q86XK2-3927585670927Deletionnonenone585585
Q86XK2FBXO11Q86XK2-1Q86XK2-4927211197211SubstitutionKRLYMEVFEYTRPMMLGEVAHAYNPSTLGG197211
Q86XK2FBXO11Q86XK2-1Q86XK2-4927211212927Deletionnonenone211211
Q86XK2FBXO11Q86XK2-1Q86XK2-6927843184Deletionnonenone00

check buttonMultiple sequence alignment of our canonical and alternatively spliced FBXO11

check button Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of FBXO11
UniProt-idENSGENSTENSP
Q86XK2-1ENSG00000138081.22ENST00000403359.8ENSP00000384823.4
Q86XK2-6ENSG00000138081.22ENST00000402508.5ENSP00000385398.1

UniProt-idNM IDNP ID
Q86XK2-1NM_001190274.1NP_001177203.1
Q86XK2-6NM_025133.4NP_079409.3

check buttonAmino acid sequences of our canonical and alternatively spliced FBXO11
accession_idProtein sequence
Q86XK2-1MNSVRAANRRPRRVSRPRPVQQQQQQPPQQPPPQPPQQQPPQQQPPPPPQQQQQQQPPPPPPPPPPLPQERNNVGERDDDVPADMVAEES
GPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAA
CVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYD
TIEDALGGVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNA
HHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNH
IHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRG
NSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVL
RRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNP
TLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGV
NVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCT
Q86XK2-2MMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEW
IYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAV
CVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRI
AGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGN
ALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIY
NHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGIVVNFA
Q86XK2-3MVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQ
DLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRE
NMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKS
AQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNP
IIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNS
DPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTT
Q86XK2-4MNSVRAANRRPRRVSRPRPVQQQQQQPPQQPPPQPPQQQPPQQQPPPPPQQQQQQQPPPPPPPPPPLPQERNNVGERDDDVPADMVAEES
GPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAA
Q86XK2-6MVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQ
DLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRE
NMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKS
AQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNP
IIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNS
DPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTT
GSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWI
KTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGL
FLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGT

Protein Functional Features

check buttonMain function of this protein. (from UniProt)
FBXO11 (go to UniProt):Q86XK2

check buttonRetention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
Accession_idSubsectionStartEndFuncitonal featureSplicing information
Q86XK2Domain153199Note=F-box;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00080Type=Deletion;Start=1;End=209
Q86XK2Domain153199Note=F-box;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00080Type=Substitution;Start=197;End=211
Q86XK2Repeat395417Note=PbH1 1Type=Deletion;Start=212;End=927
Q86XK2Repeat418440Note=PbH1 2Type=Deletion;Start=212;End=927
Q86XK2Repeat441463Note=PbH1 3Type=Deletion;Start=212;End=927
Q86XK2Repeat464486Note=PbH1 4Type=Deletion;Start=212;End=927
Q86XK2Repeat487509Note=PbH1 5Type=Deletion;Start=212;End=927
Q86XK2Repeat510532Note=PbH1 6Type=Deletion;Start=212;End=927
Q86XK2Repeat533555Note=PbH1 7Type=Deletion;Start=212;End=927
Q86XK2Repeat556578Note=PbH1 8Type=Deletion;Start=212;End=927
Q86XK2Repeat579601Note=PbH1 9Type=Deletion;Start=212;End=927
Q86XK2Repeat602624Note=PbH1 10Type=Deletion;Start=212;End=927
Q86XK2Repeat625647Note=PbH1 11Type=Deletion;Start=212;End=927
Q86XK2Repeat648670Note=PbH1 12Type=Deletion;Start=670;End=927
Q86XK2Repeat648670Note=PbH1 12Type=Deletion;Start=212;End=927
Q86XK2Repeat671693Note=PbH1 13Type=Deletion;Start=670;End=927
Q86XK2Repeat671693Note=PbH1 13Type=Deletion;Start=212;End=927
Q86XK2Repeat694716Note=PbH1 14Type=Deletion;Start=670;End=927
Q86XK2Repeat694716Note=PbH1 14Type=Deletion;Start=212;End=927
Q86XK2Repeat717739Note=PbH1 15Type=Deletion;Start=670;End=927
Q86XK2Repeat717739Note=PbH1 15Type=Deletion;Start=212;End=927
Q86XK2Repeat740762Note=PbH1 16Type=Substitution;Start=744;End=770
Q86XK2Repeat740762Note=PbH1 16Type=Deletion;Start=670;End=927
Q86XK2Repeat740762Note=PbH1 16Type=Deletion;Start=212;End=927
Q86XK2Repeat763785Note=PbH1 17Type=Substitution;Start=744;End=770
Q86XK2Repeat763785Note=PbH1 17Type=Deletion;Start=771;End=927
Q86XK2Repeat763785Note=PbH1 17Type=Deletion;Start=670;End=927
Q86XK2Repeat763785Note=PbH1 17Type=Deletion;Start=212;End=927
Q86XK2Repeat786808Note=PbH1 18Type=Deletion;Start=771;End=927
Q86XK2Repeat786808Note=PbH1 18Type=Deletion;Start=670;End=927
Q86XK2Repeat786808Note=PbH1 18Type=Deletion;Start=212;End=927
Q86XK2Repeat809830Note=PbH1 19Type=Deletion;Start=771;End=927
Q86XK2Repeat809830Note=PbH1 19Type=Deletion;Start=670;End=927
Q86XK2Repeat809830Note=PbH1 19Type=Deletion;Start=212;End=927
Q86XK2Zinc finger833904Note=UBR-type;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00508Type=Deletion;Start=771;End=927
Q86XK2Zinc finger833904Note=UBR-type;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00508Type=Deletion;Start=670;End=927
Q86XK2Zinc finger833904Note=UBR-type;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00508Type=Deletion;Start=212;End=927
Q86XK2Region1132Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=209
Q86XK2Region1132Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=84
Q86XK2Region1132Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=84
Q86XK2Compositional bias2470Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=209
Q86XK2Compositional bias2470Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=84
Q86XK2Compositional bias2470Note=Pro residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=84
Q86XK2Compositional bias116130Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Deletion;Start=1;End=209


Gene Isoform Structures and Expression Levels for FBXO11

check buttonGene structures of our canonical and alternative spliced genes of FBXO11
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
gene isoform structure of FBXO11

check button Expression levels of gene isoforms across GTEx.
gtex expression

check button Expression levels of gene isoforms across TCGA.
tcga expression


Protein Structures

check button PDB and CIF files of the predicted protein structures
* Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
3D view using mol* of Q86XK2-1
3D view using mol* of Q86XK2-2
3D view using mol* of Q86XK2-3
3D view using mol* of Q86XK2-4
3D view using mol* of Q86XK2-6


pLDDT Score Distribution

check button pLDDT score distribution of the predicted protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
pLDDT distribution across the protein length of Q86XK2-1
all structure
pLDDT distribution across the protein length of Q86XK2-2
all structure
pLDDT distribution across the protein length of Q86XK2-3
all structure
pLDDT distribution across the protein length of Q86XK2-4
all structure
pLDDT distribution across the protein length of Q86XK2-6
all structure


Ramachandran Plot of Protein Structures


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide.
Ramachandran plot of Q86XK2-1
all structure
Ramachandran plot of Q86XK2-2
all structure
Ramachandran plot of Q86XK2-4
all structure
Ramachandran plot of Q86XK2-6
all structure

Potential Active Site Information


check button The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite.
UniProt-idSite scoreSizeD scoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues
Q86XK2-11.0082901.0411164.4850.6020.6820.8640.3990.9450.4230.996617,618,621,640,641,644,662,663,664,667,669,685,68
6,690,692,708,709,710,713,715,731,732,736,738,754,
755,756,759,777,778,782,800,801,837,838,839,840,84
1,842,843,844,845,846,885,890,891,893,898,899,902,
903,904,905,906,907,908,911,913,914,915,916,917,91
8,919,920,921,923
Q86XK2-20.664240.60269.6290.6130.7020.9941.0650.8571.2420.8551,9,11,100,101,102,103,104,105,107,134
Q86XK2-30.789330.83368.60.6450.6210.8392.7430.24411.2462.35989,90,93,112,149,150,152,153,156
Q86XK2-40.645310.55380.2620.6130.6540.9350.3761.1130.3384.923168,169,171,172,173,176,195,196,199
Q86XK2-61.0082421.039637.2940.5930.6840.8910.5810.9550.6081.018624,625,629,631,647,648,652,654,655,670,671,675,67
7,700,701,753,754,755,756,757,758,759,760,761,777,
779,798,800,801,802,803,805,806,807,809,814,815,81
8,819,821,822,823,824,825,826,827,828,829,830,831,
833,834

Protein Structure and Feature Comparision


check button Protein Structure Comparision Using Template Modeling Scores (TM-score).
all structure

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green)
3D view using mol* of Q86XK2-1_Q86XK2-1_5vmd_A.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q86XK2-1_5vmd_A_Q86XK2-2.pdb
3D view using mol* of Q86XK2-1_5vmd_A_Q86XK2-3.pdb
3D view using mol* of Q86XK2-1_5vmd_A_Q86XK2-4.pdb
3D view using mol* of Q86XK2-1_5vmd_A_Q86XK2-6.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q86XK2-1_Q86XK2-2.pdb
3D view using mol* of Q86XK2-1_Q86XK2-3.pdb
3D view using mol* of Q86XK2-1_Q86XK2-4.pdb
3D view using mol* of Q86XK2-1_Q86XK2-6.pdb

check button Protein Feature Comparison of the protein sequendary structures among the protiens.
./stats/secondary_structure/figure/Q86XK2-1_vs_Q86XK2-2.png
all structure<
./stats/secondary_structure/figure/Q86XK2-1_vs_Q86XK2-3.png
all structure<
./stats/secondary_structure/figure/Q86XK2-1_vs_Q86XK2-4.png
all structure<
./stats/secondary_structure/figure/Q86XK2-1_vs_Q86XK2-6.png
all structure<

check button Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens.
./stats/relative_asa/Q86XK2-1_vs_Q86XK2-2.png
all structure<
./stats/relative_asa/Q86XK2-1_vs_Q86XK2-3.png
all structure<
./stats/relative_asa/Q86XK2-1_vs_Q86XK2-4.png
all structure<
./stats/relative_asa/Q86XK2-1_vs_Q86XK2-6.png
all structure<


Protein-Protein Interaction


check button Interactors from UniProt.
Accession_idSubsectionStartEndFuncitonal featureSplicing information


check button Interactors from STRING.
Gene nameInteractors


Related Drugs to FBXO11


check button Drugs targeting this gene/protein.
(DrugBank)
UniProt accessionGene nameDrugBank IDDrug nameDrug groupActions

Related Diseases to FBXO11


check button Previous studies relating to the alternative splicing of FBXO11 and disease information from the MeSH term (PubMed)
GenePMIDTitleAbstractMeSH IDMeSH term


Clinically important variants in FBXO11


check button (ClinVar, 04/20/2024)
accession_iduniprot_idgene_nameTypeVariantClinical_significance