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Center for Computational Systems Medicine
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Protein Summary

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AS Summary

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Protein Functional Features

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Gene Isoform Structures and Expression Levels

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Protein Structures

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pLDDT Score Distribution

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Ramachandran Plot of Protein Structures

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Potential Active Site Information

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Protein Structure and Feature Comparision

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Protein-Protein Interaction

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Related Drugs

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Related Diseases

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Clinically Important Variants

Protein:ARHGEF7

Protein Summary

check button Gene summary
Gene name: ARHGEF7
ASpdb.0 ID: 8874
Gene
Gene symbol

ARHGEF7

Gene ID

8874

Gene nameRho guanine nucleotide exchange factor 7
SynonymsBETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB
Cytomap

13q34

Type of geneprotein-coding
Descriptionrho guanine nucleotide exchange factor 7PAK-interacting exchange factor betaRho guanine nucleotide exchange factor (GEF) 7SH3 domain-containing proline-rich protein
Modification date20240407
UniProtAcc

Q14155


check button Gene ontology of this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
GeneARHGEF7

GO:0005085

guanyl-nucleotide exchange factor activity

21048939

GeneARHGEF7

GO:0005813

centrosome

27012601

GeneARHGEF7

GO:0032991

protein-containing complex

11864573

GeneARHGEF7

GO:0043005

neuron projection

21048939

GeneARHGEF7

GO:0043015

gamma-tubulin binding

27012601

GeneARHGEF7

GO:0043025

neuronal cell body

21048939

GeneARHGEF7

GO:0043547

positive regulation of GTPase activity

21048939

GeneARHGEF7

GO:0097431

mitotic spindle pole

27012601



AS Summary

check button Information of the canonical protein with experimentally identified structure from PDB (2023).
UniProt AccFile namePDB IDMethodResolutionChainStartEnd
Q14155-4Q14155-4_5sxp_A.pdb5SXPX-ray1.65A183243

check button ASpdb's canonical and alternatively spliced isoform information.
accession_idgene_namecanonical_idalternative_idcanonical_lengthalternative_lengthcanonical_startcanonical_endtypeoriginalSEQvariationSEQalternative_startalternative_end
Q14155ARHGEF7Q14155-4Q14155-18036461178Deletionnonenone00
Q14155ARHGEF7Q14155-4Q14155-1803646733803SubstitutionTWQGTDLMHNHVLADDDQPSLDSLGRRSSLSRLEPSDLSEDSDYDSIWTAHSYRMGSTSRKSCCSYISHQNSSRKESAPQVLLPEEEKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDETNL555646
Q14155ARHGEF7Q14155-4Q14155-280375356105Deletionnonenone5555
Q14155ARHGEF7Q14155-4Q14155-380378285105Deletionnonenone8484
Q14155ARHGEF7Q14155-4Q14155-580373185177Deletionnonenone8484
Q14155ARHGEF7Q14155-4Q14155-5803731733803SubstitutionTWQGTDLMHNHVLADDDQPSLDSLGRRSSLSRLEPSDLSEDSDYDSIWTAHSYRMGSTSRKSCCSYISHQNSSRKESAPQVLLPEEEKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDETNL640731
Q14155ARHGEF7Q14155-4Q14155-68036251178Deletionnonenone00

check buttonMultiple sequence alignment of our canonical and alternatively spliced ARHGEF7

check button Matched gene isoform IDs with Ensembl and RefSeq of our canonical and alternative spliced genes of ARHGEF7
UniProt-idENSGENSTENSP
Q14155-4ENSG00000102606.20ENST00000375741.6ENSP00000364893.2
Q14155-1ENSG00000102606.20ENST00000375736.8ENSP00000364888.4
Q14155-1ENSG00000102606.20ENST00000426073.6ENSP00000397068.2
Q14155-2ENSG00000102606.20ENST00000375739.6ENSP00000364891.2
Q14155-3ENSG00000102606.20ENST00000317133.9ENSP00000325994.5
Q14155-6ENSG00000102606.20ENST00000375723.5ENSP00000364875.1

UniProt-idNM IDNP ID
Q14155-4NM_001113511.2NP_001106983.1
Q14155-1NM_001113513.1NP_001106985.1
Q14155-1NM_001320851.1NP_001307780.1
Q14155-1NM_003899.3NP_003890.1
Q14155-2NM_001113512.2NP_001106984.1
Q14155-3NM_145735.3NP_663788.1
Q14155-6NM_001330597.1NP_001317526.1
Q14155-6NM_001330598.1NP_001317527.1

check buttonAmino acid sequences of our canonical and alternatively spliced ARHGEF7
accession_idProtein sequence
Q14155-4MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRLELLFPPS
QPPQHLVTTILLSASTFDANDLYQGQNFNKVLSSLVTLNKVTADIGLGSDSVCARPSSHRIKSFDSLGSQSLHTRTSKLFQGQYRSLDMT
DNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKASEKPVSPKSGTLKSPPKGFDTTAINKS
YYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTL
YLTYCANHPSAVNVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQE
VRKRKELELQILTEAIRNWEGDDIKTLGNVTYMSQVLIQCAGSEEKNERYLLLFPNVLLMLSASPRMSGFIYQGKLPTTGMTITKLEDSE
NHRNAFEISGSMIERILVSCNNQQDLQEWVEHLQKQTKVTSVGNPTIKPHSVPSHTLPSHPVTPSSKHADSKPAPLTPAYHTLPHPSHHG
TPHTTINWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSKSPKTMKKLLPKRKPERKPSDEEFASRKSTAALEEDAQILKVIEAY
Q14155-1MTDNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKASEKPVSPKSGTLKSPPKGFDTTAIN
KSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMK
TLYLTYCANHPSAVNVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQC
QEVRKRKELELQILTEAIRNWEGDDIKTLGNVTYMSQVLIQCAGSEEKNERYLLLFPNVLLMLSASPRMSGFIYQGKLPTTGMTITKLED
SENHRNAFEISGSMIERILVSCNNQQDLQEWVEHLQKQTKVTSVGNPTIKPHSVPSHTLPSHPVTPSSKHADSKPAPLTPAYHTLPHPSH
HGTPHTTINWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSKSPKTMKKLLPKRKPERKPSDEEFASRKSTAALEEDAQILKVIE
AYCTSAKTRQTLNSSSRKESAPQVLLPEEEKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR
Q14155-2MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKTFDANDLYQGQNFNKVLSSLVTLNKVTADIGLGSD
SVCARPSSHRIKSFDSLGSQSLHTRTSKLFQGQYRSLDMTDNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRT
GWFPSNYVREVKASEKPVSPKSGTLKSPPKGFDTTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGNLE
EICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRL
DKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQILTEAIRNWEGDDIKTLGNVTYMSQVLIQCAGSEEKNERY
LLLFPNVLLMLSASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGSMIERILVSCNNQQDLQEWVEHLQKQTKVTSVGNPTIKPH
SVPSHTLPSHPVTPSSKHADSKPAPLTPAYHTLPHPSHHGTPHTTINWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSKSPKTM
KKLLPKRKPERKPSDEEFASRKSTAALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTDLMHNHVLADDDQPSLDSLGRRSSLSRLEPSDL
Q14155-3MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRLETFDAND
LYQGQNFNKVLSSLVTLNKVTADIGLGSDSVCARPSSHRIKSFDSLGSQSLHTRTSKLFQGQYRSLDMTDNSNNQLVVRAKFNFQQTNED
ELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKASEKPVSPKSGTLKSPPKGFDTTAINKSYYNVVLQNILETENEYSKELQ
TVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEHSEE
LGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQILTEAIRNWEG
DDIKTLGNVTYMSQVLIQCAGSEEKNERYLLLFPNVLLMLSASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGSMIERILVSCN
NQQDLQEWVEHLQKQTKVTSVGNPTIKPHSVPSHTLPSHPVTPSSKHADSKPAPLTPAYHTLPHPSHHGTPHTTINWGPLEPPKTPKPWS
LSCLRPAPPLRPSAALCYKEDLSKSPKTMKKLLPKRKPERKPSDEEFASRKSTAALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTDLMH
Q14155-5MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRLEDMTDNS
NNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKASEKPVSPKSGTLKSPPKGFDTTAINKSYYN
VVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTLYLT
YCANHPSAVNVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRK
RKELELQILTEAIRNWEGDDIKTLGNVTYMSQVLIQCAGSEEKNERYLLLFPNVLLMLSASPRMSGFIYQGKLPTTGMTITKLEDSENHR
NAFEISGSMIERILVSCNNQQDLQEWVEHLQKQTKVTSVGNPTIKPHSVPSHTLPSHPVTPSSKHADSKPAPLTPAYHTLPHPSHHGTPH
TTINWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSKSPKTMKKLLPKRKPERKPSDEEFASRKSTAALEEDAQILKVIEAYCTS
AKTRQTLNSSSRKESAPQVLLPEEEKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN
Q14155-6MTDNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKASEKPVSPKSGTLKSPPKGFDTTAIN
KSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMK
TLYLTYCANHPSAVNVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQC
QEVRKRKELELQILTEAIRNWEGDDIKTLGNVTYMSQVLIQCAGSEEKNERYLLLFPNVLLMLSASPRMSGFIYQGKLPTTGMTITKLED
SENHRNAFEISGSMIERILVSCNNQQDLQEWVEHLQKQTKVTSVGNPTIKPHSVPSHTLPSHPVTPSSKHADSKPAPLTPAYHTLPHPSH
HGTPHTTINWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSKSPKTMKKLLPKRKPERKPSDEEFASRKSTAALEEDAQILKVIE

Protein Functional Features

check buttonMain function of this protein. (from UniProt)
ARHGEF7 (go to UniProt):Q14155

check buttonRetention analysis result of protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
Accession_idSubsectionStartEndFuncitonal featureSplicing information
Q14155Domain1133Note=Calponin-homology (CH);Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00044Type=Deletion;Start=1;End=178
Q14155Domain1133Note=Calponin-homology (CH);Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00044Type=Deletion;Start=56;End=105
Q14155Domain1133Note=Calponin-homology (CH);Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00044Type=Deletion;Start=85;End=105
Q14155Domain1133Note=Calponin-homology (CH);Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00044Type=Deletion;Start=85;End=177
Q14155Domain1133Note=Calponin-homology (CH);Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00044Type=Deletion;Start=1;End=178
Q14155Region748773Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=733;End=803
Q14155Region748773Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-liteType=Substitution;Start=733;End=803


Gene Isoform Structures and Expression Levels for ARHGEF7

check buttonGene structures of our canonical and alternative spliced genes of ARHGEF7
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
gene isoform structure of ARHGEF7

check button Expression levels of gene isoforms across GTEx.
gtex expression

check button Expression levels of gene isoforms across TCGA.
tcga expression


Protein Structures

check button PDB and CIF files of the predicted protein structures
* Here we show the 3D structure of the proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
3D view using mol* of Q14155-4
3D view using mol* of Q14155-1
3D view using mol* of Q14155-2
3D view using mol* of Q14155-3
3D view using mol* of Q14155-5
3D view using mol* of Q14155-6


pLDDT Score Distribution

check button pLDDT score distribution of the predicted protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
pLDDT distribution across the protein length of Q14155-4
all structure
pLDDT distribution across the protein length of Q14155-1
all structure
pLDDT distribution across the protein length of Q14155-2
all structure
pLDDT distribution across the protein length of Q14155-3
all structure
pLDDT distribution across the protein length of Q14155-5
all structure
pLDDT distribution across the protein length of Q14155-6
all structure


Ramachandran Plot of Protein Structures


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this protein peptide.
Ramachandran plot of Q14155-4
all structure
Ramachandran plot of Q14155-3
all structure
Ramachandran plot of Q14155-6
all structure

Potential Active Site Information


check button The potential binding sites of these proteins were identified using SiteMap, a module of the Schrodinger suite.
UniProt-idSite scoreSizeD scoreVolumeExposureEnclosureContactPhobicPhilicBalanceDon/AccResidues
Q14155-41.0596091.1181902.9640.5760.70.8761.0010.7431.3481.25945,48,49,73,74,77,78,80,81,82,84,85,86,87,88,89,90
,91,92,93,94,95,96,98,99,101,102,103,106,107,124,1
26,127,128,130,131,132,134,135,137,282,285,286,289
,290,292,293,362,368,369,372,373,375,376,379,380,3
92,393,394,396,397,398,400,401,402,404,405,407,408
,409,410,411,412,445,447,448,449,450,451,452,453,4
54,456,457,459,460,463,464,482,483,484,485,500,513
,514,516,517,518,519,520,561,562,564,565,568,656,6
57,658,659
Q14155-11.0031341.043479.5140.6660.6640.7820.5880.9060.650.886183,186,190,191,194,195,197,198,199,201,218,219,22
2,226,228,229,230,232,233,267,270,271,274,275,278,
281,282,285,473,474,475,476,477,478
Q14155-21.051901.11680.8550.6110.6880.8821.3180.7441.7711.07736,37,38,39,41,42,43,44,45,46,48,49,50,51,52,53,54
,55,56,57,58,59,60,62,63,74,75,77,78,81,82,85,465,
466,467,731,732,733,734,735,736,737,742
Q14155-31.0062291.036779.9820.5550.6850.8850.5470.9660.5660.973261,264,265,268,347,351,354,355,358,375,376,379,38
0,382,383,384,386,387,388,389,390,391,393,395,421,
424,427,428,431,432,435,754,755,756,757,758,759,76
0,761,762,763,764
Q14155-50.9971621.033516.5580.6040.6610.8520.3830.9310.4110.64101,102,103,105,109,126,127,128,141,142,143,144,17
4,175,178,182,185,186,189,192,193,196,312,315,316,
319,321,322,323,325,326,329,330,345,349
Q14155-61.061701.096569.0370.550.7451.0030.9650.8931.0811.795104,107,108,111,190,194,197,198,218,219,222,223,22
5,226,227,229,230,231,232,233,234,267,270,271,274,
275,534,537,538,539,540,541,542,544,545,547,548

Protein Structure and Feature Comparision


check button Protein Structure Comparision Using Template Modeling Scores (TM-score).
all structure

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Canonical validated structure (PDB)(green)
3D view using mol* of Q14155-4_Q14155-4_5sxp_A.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical validated structure (PDB)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q14155-4_5sxp_A_Q14155-1.pdb
3D view using mol* of Q14155-4_5sxp_A_Q14155-2.pdb
3D view using mol* of Q14155-4_5sxp_A_Q14155-3.pdb
3D view using mol* of Q14155-4_5sxp_A_Q14155-5.pdb
3D view using mol* of Q14155-4_5sxp_A_Q14155-6.pdb

check button Protein Structure Comparision Visualization with mol*. between Canonical predicted structure (AF2)(orange) vs Alternative predicted structure (AF2)(green)
3D view using mol* of Q14155-4_Q14155-1.pdb
3D view using mol* of Q14155-4_Q14155-2.pdb
3D view using mol* of Q14155-4_Q14155-3.pdb
3D view using mol* of Q14155-4_Q14155-5.pdb
3D view using mol* of Q14155-4_Q14155-6.pdb

check button Protein Feature Comparison of the protein sequendary structures among the protiens.
./stats/secondary_structure/figure/Q14155-4_vs_Q14155-1.png
all structure<
./stats/secondary_structure/figure/Q14155-4_vs_Q14155-2.png
all structure<
./stats/secondary_structure/figure/Q14155-4_vs_Q14155-3.png
all structure<
./stats/secondary_structure/figure/Q14155-4_vs_Q14155-5.png
all structure<
./stats/secondary_structure/figure/Q14155-4_vs_Q14155-6.png
all structure<

check button Protein Feature Comparison of the relative accessible surface area (ASA) among the protiens.
./stats/relative_asa/Q14155-4_vs_Q14155-1.png
all structure<
./stats/relative_asa/Q14155-4_vs_Q14155-2.png
all structure<
./stats/relative_asa/Q14155-4_vs_Q14155-3.png
all structure<
./stats/relative_asa/Q14155-4_vs_Q14155-5.png
all structure<
./stats/relative_asa/Q14155-4_vs_Q14155-6.png
all structure<


Protein-Protein Interaction


check button Interactors from UniProt.
Accession_idSubsectionStartEndFuncitonal featureSplicing information


check button Interactors from STRING.
Gene nameInteractors


Related Drugs to ARHGEF7


check button Drugs targeting this gene/protein.
(DrugBank)
UniProt accessionGene nameDrugBank IDDrug nameDrug groupActions

Related Diseases to ARHGEF7


check button Previous studies relating to the alternative splicing of ARHGEF7 and disease information from the MeSH term (PubMed)
GenePMIDTitleAbstractMeSH IDMeSH term


Clinically important variants in ARHGEF7


check button (ClinVar, 04/20/2024)
accession_iduniprot_idgene_nameTypeVariantClinical_significance